Gene : Phvul.001G174000 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1718
Name:  ? Phvul.001G174000 Secondary Identifier:  ? PAC:37168513
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G174000 0.5kb upstream 0.5kb upstream 9246 true Chr01: 43050717-43059962 Phaseolus vulgaris
Phvul.001G174000 0.5kb upstream 0.5kb upstream 500 false Chr01: 43059463-43059962 Phaseolus vulgaris
Phvul.001G174000 0.5kb downstream 0.5kb downstream 9246 true Chr01: 43050217-43059462 Phaseolus vulgaris
Phvul.001G174000 0.5kb downstream 0.5kb downstream 500 false Chr01: 43050217-43050716 Phaseolus vulgaris
Phvul.001G174000 1.0kb upstream 1.0kb upstream 9746 true Chr01: 43050717-43060462 Phaseolus vulgaris
Phvul.001G174000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 43059463-43060462 Phaseolus vulgaris
Phvul.001G174000 1.0kb downstream 1.0kb downstream 9746 true Chr01: 43049717-43059462 Phaseolus vulgaris
Phvul.001G174000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 43049717-43050716 Phaseolus vulgaris
Phvul.001G174000 2.0kb upstream 2.0kb upstream 10746 true Chr01: 43050717-43061462 Phaseolus vulgaris
Phvul.001G174000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 43059463-43061462 Phaseolus vulgaris
Phvul.001G174000 2.0kb downstream 2.0kb downstream 10746 true Chr01: 43048717-43059462 Phaseolus vulgaris
Phvul.001G174000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 43048717-43050716 Phaseolus vulgaris
Phvul.001G174000 5.0kb upstream 5.0kb upstream 13746 true Chr01: 43050717-43064462 Phaseolus vulgaris
Phvul.001G174000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 43059463-43064462 Phaseolus vulgaris
Phvul.001G174000 5.0kb downstream 5.0kb downstream 13746 true Chr01: 43045717-43059462 Phaseolus vulgaris
Phvul.001G174000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 43045717-43050716 Phaseolus vulgaris
Phvul.001G174000 10.0kb upstream 10.0kb upstream 18746 true Chr01: 43050717-43069462 Phaseolus vulgaris
Phvul.001G174000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 43059463-43069462 Phaseolus vulgaris
Phvul.001G174000 10.0kb downstream 10.0kb downstream 18746 true Chr01: 43040717-43059462 Phaseolus vulgaris
Phvul.001G174000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 43040717-43050716 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302518 5265 Fabidae View MSA
124068015 5270 Rosid View MSA
123738487 5271 Pentapetalae View MSA
122789712 5272 Eudicot View MSA
122044126 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121347187 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.14037 0.0 8.53335    
cufflinks 4.02656 0.0 15.4525    
cufflinks 108.049 0.0 418.08 High High
cufflinks 1.70832 0.0 7.19784    
cufflinks 4.06547 0.0 13.6061    
cufflinks 24.9881 0.0 80.8789   High
cufflinks 2.8176 0.0 10.0989    
cufflinks 2.65573 0.0 9.48708    
cufflinks 2.29973 0.0 8.74738    
cufflinks 6.44948 0.0 22.473    
cufflinks 3.30982 0.0 13.4267    

0 Strain