Gene : Phvul.001G178300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10741:SF2 - TRANSLIN Genomic Order:  1762
Name:  ? Phvul.001G178300 Secondary Identifier:  ? PAC:37169405
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G178300 0.5kb upstream 0.5kb upstream 8391 true Chr01: 43556222-43564612 Phaseolus vulgaris
Phvul.001G178300 0.5kb upstream 0.5kb upstream 500 false Chr01: 43564113-43564612 Phaseolus vulgaris
Phvul.001G178300 0.5kb downstream 0.5kb downstream 8391 true Chr01: 43555722-43564112 Phaseolus vulgaris
Phvul.001G178300 0.5kb downstream 0.5kb downstream 500 false Chr01: 43555722-43556221 Phaseolus vulgaris
Phvul.001G178300 1.0kb upstream 1.0kb upstream 8891 true Chr01: 43556222-43565112 Phaseolus vulgaris
Phvul.001G178300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 43564113-43565112 Phaseolus vulgaris
Phvul.001G178300 1.0kb downstream 1.0kb downstream 8891 true Chr01: 43555222-43564112 Phaseolus vulgaris
Phvul.001G178300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 43555222-43556221 Phaseolus vulgaris
Phvul.001G178300 2.0kb upstream 2.0kb upstream 9891 true Chr01: 43556222-43566112 Phaseolus vulgaris
Phvul.001G178300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 43564113-43566112 Phaseolus vulgaris
Phvul.001G178300 2.0kb downstream 2.0kb downstream 9891 true Chr01: 43554222-43564112 Phaseolus vulgaris
Phvul.001G178300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 43554222-43556221 Phaseolus vulgaris
Phvul.001G178300 5.0kb upstream 5.0kb upstream 12891 true Chr01: 43556222-43569112 Phaseolus vulgaris
Phvul.001G178300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 43564113-43569112 Phaseolus vulgaris
Phvul.001G178300 5.0kb downstream 5.0kb downstream 12891 true Chr01: 43551222-43564112 Phaseolus vulgaris
Phvul.001G178300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 43551222-43556221 Phaseolus vulgaris
Phvul.001G178300 10.0kb upstream 10.0kb upstream 17891 true Chr01: 43556222-43574112 Phaseolus vulgaris
Phvul.001G178300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 43564113-43574112 Phaseolus vulgaris
Phvul.001G178300 10.0kb downstream 10.0kb downstream 17891 true Chr01: 43546222-43564112 Phaseolus vulgaris
Phvul.001G178300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 43546222-43556221 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299168 5265 Fabidae View MSA
124066940 5270 Rosid View MSA
123747693 5271 Pentapetalae View MSA
122792898 5272 Eudicot View MSA
122045225 5273 Angiosperm View MSA
121345043 5274 Embryophyte View MSA
123426526 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.6584 0.0 31.9276    
cufflinks 12.4236 0.0 33.9572    
cufflinks 11.3104 0.0 31.1758    
cufflinks 19.0457 0.0 50.4541   High
cufflinks 9.23685 0.0 25.9366    
cufflinks 8.90276 0.0 25.0765    
cufflinks 6.15225 0.0 17.95   Low
cufflinks 5.65831 0.0 16.6592   Low
cufflinks 6.40922 0.0 18.6693   Low
cufflinks 9.75539 0.0 27.2589    
cufflinks 10.8843 0.0 30.1194    

0 Strain