Gene : Phvul.001G176400 P. vulgaris v2.1
Defline:  (1 of 25) PTHR32077:SF7 - FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 11 Genomic Order:  1743
Name:  ? Phvul.001G176400 Secondary Identifier:  ? PAC:37169267
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G176400 0.5kb upstream 0.5kb upstream 1661 true Chr01: 43316518-43318178 Phaseolus vulgaris
Phvul.001G176400 0.5kb upstream 0.5kb upstream 500 false Chr01: 43317679-43318178 Phaseolus vulgaris
Phvul.001G176400 0.5kb downstream 0.5kb downstream 1661 true Chr01: 43316018-43317678 Phaseolus vulgaris
Phvul.001G176400 0.5kb downstream 0.5kb downstream 500 false Chr01: 43316018-43316517 Phaseolus vulgaris
Phvul.001G176400 1.0kb upstream 1.0kb upstream 2161 true Chr01: 43316518-43318678 Phaseolus vulgaris
Phvul.001G176400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 43317679-43318678 Phaseolus vulgaris
Phvul.001G176400 1.0kb downstream 1.0kb downstream 2161 true Chr01: 43315518-43317678 Phaseolus vulgaris
Phvul.001G176400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 43315518-43316517 Phaseolus vulgaris
Phvul.001G176400 2.0kb upstream 2.0kb upstream 3161 true Chr01: 43316518-43319678 Phaseolus vulgaris
Phvul.001G176400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 43317679-43319678 Phaseolus vulgaris
Phvul.001G176400 2.0kb downstream 2.0kb downstream 3161 true Chr01: 43314518-43317678 Phaseolus vulgaris
Phvul.001G176400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 43314518-43316517 Phaseolus vulgaris
Phvul.001G176400 5.0kb upstream 5.0kb upstream 6161 true Chr01: 43316518-43322678 Phaseolus vulgaris
Phvul.001G176400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 43317679-43322678 Phaseolus vulgaris
Phvul.001G176400 5.0kb downstream 5.0kb downstream 6161 true Chr01: 43311518-43317678 Phaseolus vulgaris
Phvul.001G176400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 43311518-43316517 Phaseolus vulgaris
Phvul.001G176400 10.0kb upstream 10.0kb upstream 11161 true Chr01: 43316518-43327678 Phaseolus vulgaris
Phvul.001G176400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 43317679-43327678 Phaseolus vulgaris
Phvul.001G176400 10.0kb downstream 10.0kb downstream 11161 true Chr01: 43306518-43317678 Phaseolus vulgaris
Phvul.001G176400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 43306518-43316517 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309641 5265 Fabidae View MSA
124062228 5270 Rosid View MSA
123750165 5271 Pentapetalae View MSA
122791630 5272 Eudicot View MSA
122047379 5273 Angiosperm View MSA
121351509 5274 Embryophyte View MSA
123426561 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.7504 0.0 62.4913    
cufflinks 20.2328 0.0 53.9168   Low
cufflinks 18.856 0.0 50.4513   Low
cufflinks 63.1794 0.0 164.373 High  
cufflinks 403.287 0.0 1274.29 High High
cufflinks 106.708 0.0 285.487 High  
cufflinks 126.408 0.0 344.317 High  
cufflinks 23.0603 0.0 60.8844   Low
cufflinks 106.087 0.0 284.598 High  
cufflinks 140.639 0.0 385.375 High  
cufflinks 575.692 0.0 1948.4 High High

0 Strain