Gene : Phvul.001G170000 P. vulgaris v2.1
Defline:  (1 of 252) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  1677
Name:  ? Phvul.001G170000 Secondary Identifier:  ? PAC:37170070
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G170000 0.5kb upstream 0.5kb upstream 2999 true Chr01: 42667247-42670245 Phaseolus vulgaris
Phvul.001G170000 0.5kb upstream 0.5kb upstream 500 false Chr01: 42669746-42670245 Phaseolus vulgaris
Phvul.001G170000 0.5kb downstream 0.5kb downstream 2999 true Chr01: 42666747-42669745 Phaseolus vulgaris
Phvul.001G170000 0.5kb downstream 0.5kb downstream 500 false Chr01: 42666747-42667246 Phaseolus vulgaris
Phvul.001G170000 1.0kb upstream 1.0kb upstream 3499 true Chr01: 42667247-42670745 Phaseolus vulgaris
Phvul.001G170000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 42669746-42670745 Phaseolus vulgaris
Phvul.001G170000 1.0kb downstream 1.0kb downstream 3499 true Chr01: 42666247-42669745 Phaseolus vulgaris
Phvul.001G170000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 42666247-42667246 Phaseolus vulgaris
Phvul.001G170000 2.0kb upstream 2.0kb upstream 4499 true Chr01: 42667247-42671745 Phaseolus vulgaris
Phvul.001G170000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 42669746-42671745 Phaseolus vulgaris
Phvul.001G170000 2.0kb downstream 2.0kb downstream 4499 true Chr01: 42665247-42669745 Phaseolus vulgaris
Phvul.001G170000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 42665247-42667246 Phaseolus vulgaris
Phvul.001G170000 5.0kb upstream 5.0kb upstream 7499 true Chr01: 42667247-42674745 Phaseolus vulgaris
Phvul.001G170000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 42669746-42674745 Phaseolus vulgaris
Phvul.001G170000 5.0kb downstream 5.0kb downstream 7499 true Chr01: 42662247-42669745 Phaseolus vulgaris
Phvul.001G170000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 42662247-42667246 Phaseolus vulgaris
Phvul.001G170000 10.0kb upstream 10.0kb upstream 12499 true Chr01: 42667247-42679745 Phaseolus vulgaris
Phvul.001G170000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 42669746-42679745 Phaseolus vulgaris
Phvul.001G170000 10.0kb downstream 10.0kb downstream 12499 true Chr01: 42657247-42669745 Phaseolus vulgaris
Phvul.001G170000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 42657247-42667246 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305005 5265 Fabidae View MSA
124065656 5270 Rosid View MSA
123746310 5271 Pentapetalae View MSA
122791948 5272 Eudicot View MSA
122051373 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349952 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.7826 0.0 50.0281   High
cufflinks 15.6221 0.0 44.6663    
cufflinks 8.63492 0.0 26.285    
cufflinks 23.9459 0.0 65.9483   High
cufflinks 11.7051 0.0 34.6983    
cufflinks 8.25082 0.0 25.3293    
cufflinks 8.17735 0.0 25.1142    
cufflinks 10.8358 0.0 32.1108    
cufflinks 14.5481 0.0 41.9663    
cufflinks 6.12321 0.0 19.4743   Low
cufflinks 8.83212 0.0 27.0411    

0 Strain