Gene : Phvul.001G171900 P. vulgaris v2.1
Defline:  (1 of 4) K15728 - phosphatidate phosphatase LPIN (LPIN) Genomic Order:  1697
Name:  ? Phvul.001G171900 Secondary Identifier:  ? PAC:37171072
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRIGLSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G171900 0.5kb upstream 0.5kb upstream 8374 true Chr01: 42899394-42907767 Phaseolus vulgaris
Phvul.001G171900 0.5kb upstream 0.5kb upstream 500 false Chr01: 42907268-42907767 Phaseolus vulgaris
Phvul.001G171900 0.5kb downstream 0.5kb downstream 8374 true Chr01: 42898894-42907267 Phaseolus vulgaris
Phvul.001G171900 0.5kb downstream 0.5kb downstream 500 false Chr01: 42898894-42899393 Phaseolus vulgaris
Phvul.001G171900 1.0kb upstream 1.0kb upstream 8874 true Chr01: 42899394-42908267 Phaseolus vulgaris
Phvul.001G171900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 42907268-42908267 Phaseolus vulgaris
Phvul.001G171900 1.0kb downstream 1.0kb downstream 8874 true Chr01: 42898394-42907267 Phaseolus vulgaris
Phvul.001G171900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 42898394-42899393 Phaseolus vulgaris
Phvul.001G171900 2.0kb upstream 2.0kb upstream 9874 true Chr01: 42899394-42909267 Phaseolus vulgaris
Phvul.001G171900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 42907268-42909267 Phaseolus vulgaris
Phvul.001G171900 2.0kb downstream 2.0kb downstream 9874 true Chr01: 42897394-42907267 Phaseolus vulgaris
Phvul.001G171900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 42897394-42899393 Phaseolus vulgaris
Phvul.001G171900 5.0kb upstream 5.0kb upstream 12874 true Chr01: 42899394-42912267 Phaseolus vulgaris
Phvul.001G171900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 42907268-42912267 Phaseolus vulgaris
Phvul.001G171900 5.0kb downstream 5.0kb downstream 12874 true Chr01: 42894394-42907267 Phaseolus vulgaris
Phvul.001G171900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 42894394-42899393 Phaseolus vulgaris
Phvul.001G171900 10.0kb upstream 10.0kb upstream 17874 true Chr01: 42899394-42917267 Phaseolus vulgaris
Phvul.001G171900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 42907268-42917267 Phaseolus vulgaris
Phvul.001G171900 10.0kb downstream 10.0kb downstream 17874 true Chr01: 42889394-42907267 Phaseolus vulgaris
Phvul.001G171900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 42889394-42899393 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311900 5265 Fabidae View MSA
124065604 5270 Rosid View MSA
123741487 5271 Pentapetalae View MSA
122792824 5272 Eudicot View MSA
122048354 5273 Angiosperm View MSA
121350822 5274 Embryophyte View MSA
123381897 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.98449 0.0 18.9989    
cufflinks 4.97156 0.0 17.3092    
cufflinks 8.40732 0.0 32.3318   High
cufflinks 3.54986 0.0 11.5341   Low
cufflinks 5.13647 0.0 19.9438    
cufflinks 8.04748 0.0 25.9055   High
cufflinks 6.98998 0.0 27.6995    
cufflinks 5.86471 0.0 21.6704    
cufflinks 9.0454 0.0 32.0129   High
cufflinks 6.50084 0.0 23.9784    
cufflinks 3.62161 0.0 17.0583   Low

0 Strain