Gene : Phvul.001G172300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR24093:SF289 - CALCIUM-TRANSPORTING ATPASE 1, ENDOPLASMIC RETICULUM-TYPE-RELATED Genomic Order:  1701
Name:  ? Phvul.001G172300 Secondary Identifier:  ? PAC:37167785
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G172300 0.5kb upstream 0.5kb upstream 6918 true Chr01: 42935175-42942092 Phaseolus vulgaris
Phvul.001G172300 0.5kb upstream 0.5kb upstream 500 false Chr01: 42935175-42935674 Phaseolus vulgaris
Phvul.001G172300 0.5kb downstream 0.5kb downstream 6918 true Chr01: 42935675-42942592 Phaseolus vulgaris
Phvul.001G172300 0.5kb downstream 0.5kb downstream 500 false Chr01: 42942093-42942592 Phaseolus vulgaris
Phvul.001G172300 1.0kb upstream 1.0kb upstream 7418 true Chr01: 42934675-42942092 Phaseolus vulgaris
Phvul.001G172300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 42934675-42935674 Phaseolus vulgaris
Phvul.001G172300 1.0kb downstream 1.0kb downstream 7418 true Chr01: 42935675-42943092 Phaseolus vulgaris
Phvul.001G172300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 42942093-42943092 Phaseolus vulgaris
Phvul.001G172300 2.0kb upstream 2.0kb upstream 8418 true Chr01: 42933675-42942092 Phaseolus vulgaris
Phvul.001G172300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 42933675-42935674 Phaseolus vulgaris
Phvul.001G172300 2.0kb downstream 2.0kb downstream 8418 true Chr01: 42935675-42944092 Phaseolus vulgaris
Phvul.001G172300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 42942093-42944092 Phaseolus vulgaris
Phvul.001G172300 5.0kb upstream 5.0kb upstream 11418 true Chr01: 42930675-42942092 Phaseolus vulgaris
Phvul.001G172300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 42930675-42935674 Phaseolus vulgaris
Phvul.001G172300 5.0kb downstream 5.0kb downstream 11418 true Chr01: 42935675-42947092 Phaseolus vulgaris
Phvul.001G172300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 42942093-42947092 Phaseolus vulgaris
Phvul.001G172300 10.0kb upstream 10.0kb upstream 16418 true Chr01: 42925675-42942092 Phaseolus vulgaris
Phvul.001G172300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 42925675-42935674 Phaseolus vulgaris
Phvul.001G172300 10.0kb downstream 10.0kb downstream 16418 true Chr01: 42935675-42952092 Phaseolus vulgaris
Phvul.001G172300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 42942093-42952092 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307555 5265 Fabidae View MSA
124070166 5270 Rosid View MSA
123740324 5271 Pentapetalae View MSA
122794495 5272 Eudicot View MSA
122046254 5273 Angiosperm View MSA
121349492 5274 Embryophyte View MSA
123427421 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.2712 0.0 71.1722   Low
cufflinks 47.3044 0.0 136.211 High  
cufflinks 43.6779 0.0 124.331 High  
cufflinks 34.825 0.0 96.2399 High Low
cufflinks 54.0826 0.0 158.073 High  
cufflinks 52.6018 0.0 153.691 High  
cufflinks 62.0199 0.0 185.759 High  
cufflinks 68.8034 0.0 209.315 High  
cufflinks 79.7195 0.0 247.704 High High
cufflinks 53.6893 0.0 157.178 High  
cufflinks 58.1003 0.0 171.651 High  

0 Strain