Gene : Phvul.001G159300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31529:SF10 - LOB DOMAIN-CONTAINING PROTEIN 16 Genomic Order:  1569
Name:  ? Phvul.001G159300 Secondary Identifier:  ? PAC:37168712
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G159300 0.5kb upstream 0.5kb upstream 2231 true Chr01: 41194189-41196419 Phaseolus vulgaris
Phvul.001G159300 0.5kb upstream 0.5kb upstream 500 false Chr01: 41194189-41194688 Phaseolus vulgaris
Phvul.001G159300 0.5kb downstream 0.5kb downstream 2231 true Chr01: 41194689-41196919 Phaseolus vulgaris
Phvul.001G159300 0.5kb downstream 0.5kb downstream 500 false Chr01: 41196420-41196919 Phaseolus vulgaris
Phvul.001G159300 1.0kb upstream 1.0kb upstream 2731 true Chr01: 41193689-41196419 Phaseolus vulgaris
Phvul.001G159300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 41193689-41194688 Phaseolus vulgaris
Phvul.001G159300 1.0kb downstream 1.0kb downstream 2731 true Chr01: 41194689-41197419 Phaseolus vulgaris
Phvul.001G159300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 41196420-41197419 Phaseolus vulgaris
Phvul.001G159300 2.0kb upstream 2.0kb upstream 3731 true Chr01: 41192689-41196419 Phaseolus vulgaris
Phvul.001G159300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 41192689-41194688 Phaseolus vulgaris
Phvul.001G159300 2.0kb downstream 2.0kb downstream 3731 true Chr01: 41194689-41198419 Phaseolus vulgaris
Phvul.001G159300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 41196420-41198419 Phaseolus vulgaris
Phvul.001G159300 5.0kb upstream 5.0kb upstream 6731 true Chr01: 41189689-41196419 Phaseolus vulgaris
Phvul.001G159300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 41189689-41194688 Phaseolus vulgaris
Phvul.001G159300 5.0kb downstream 5.0kb downstream 6731 true Chr01: 41194689-41201419 Phaseolus vulgaris
Phvul.001G159300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 41196420-41201419 Phaseolus vulgaris
Phvul.001G159300 10.0kb upstream 10.0kb upstream 11731 true Chr01: 41184689-41196419 Phaseolus vulgaris
Phvul.001G159300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 41184689-41194688 Phaseolus vulgaris
Phvul.001G159300 10.0kb downstream 10.0kb downstream 11731 true Chr01: 41194689-41206419 Phaseolus vulgaris
Phvul.001G159300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 41196420-41206419 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027059 5273 Angiosperm View MSA
122308626 5265 Fabidae View MSA
124064336 5270 Rosid View MSA
123742221 5271 Pentapetalae View MSA
122792455 5272 Eudicot View MSA
121351593 5274 Embryophyte View MSA
123382239 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.36003 0.0 4.92489    
cufflinks 1.44291 0.0 5.18863    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.22831 0.0 0.954226 Low  
cufflinks 0.142017 0.0 0.622015 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 4.03703 0.0 12.9567   High
cufflinks 1.81001 0.0 6.3702    
cufflinks 5.92415 0.0 18.1857   High
cufflinks 0.0891371 0.0 0.40877 Low Low
cufflinks 0.216031 0.0 0.910992 Low  

0 Strain