Gene : Phvul.001G159400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31529:SF2 - LOB DOMAIN-CONTAINING PROTEIN 17-RELATED Genomic Order:  1570
Name:  ? Phvul.001G159400 Secondary Identifier:  ? PAC:37169539
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G159400 0.5kb upstream 0.5kb upstream 1483 true Chr01: 41216619-41218101 Phaseolus vulgaris
Phvul.001G159400 0.5kb upstream 0.5kb upstream 500 false Chr01: 41217602-41218101 Phaseolus vulgaris
Phvul.001G159400 0.5kb downstream 0.5kb downstream 1483 true Chr01: 41216119-41217601 Phaseolus vulgaris
Phvul.001G159400 0.5kb downstream 0.5kb downstream 500 false Chr01: 41216119-41216618 Phaseolus vulgaris
Phvul.001G159400 1.0kb upstream 1.0kb upstream 1983 true Chr01: 41216619-41218601 Phaseolus vulgaris
Phvul.001G159400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 41217602-41218601 Phaseolus vulgaris
Phvul.001G159400 1.0kb downstream 1.0kb downstream 1983 true Chr01: 41215619-41217601 Phaseolus vulgaris
Phvul.001G159400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 41215619-41216618 Phaseolus vulgaris
Phvul.001G159400 2.0kb upstream 2.0kb upstream 2983 true Chr01: 41216619-41219601 Phaseolus vulgaris
Phvul.001G159400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 41217602-41219601 Phaseolus vulgaris
Phvul.001G159400 2.0kb downstream 2.0kb downstream 2983 true Chr01: 41214619-41217601 Phaseolus vulgaris
Phvul.001G159400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 41214619-41216618 Phaseolus vulgaris
Phvul.001G159400 5.0kb upstream 5.0kb upstream 5983 true Chr01: 41216619-41222601 Phaseolus vulgaris
Phvul.001G159400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 41217602-41222601 Phaseolus vulgaris
Phvul.001G159400 5.0kb downstream 5.0kb downstream 5983 true Chr01: 41211619-41217601 Phaseolus vulgaris
Phvul.001G159400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 41211619-41216618 Phaseolus vulgaris
Phvul.001G159400 10.0kb upstream 10.0kb upstream 10983 true Chr01: 41216619-41227601 Phaseolus vulgaris
Phvul.001G159400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 41217602-41227601 Phaseolus vulgaris
Phvul.001G159400 10.0kb downstream 10.0kb downstream 10983 true Chr01: 41206619-41217601 Phaseolus vulgaris
Phvul.001G159400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 41206619-41216618 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029797 5273 Angiosperm View MSA
122313748 5265 Fabidae View MSA
124062010 5270 Rosid View MSA
123741408 5271 Pentapetalae View MSA
122794456 5272 Eudicot View MSA
121351593 5274 Embryophyte View MSA
123382239 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.800892 0.0 3.10641    
cufflinks 0.26803 0.0 1.13635 Low  
cufflinks 0.095489 0.0 0.446001 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.293252 0.0 1.23678 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.14831 0.0 4.32876    
cufflinks 0.677216 0.0 2.65155    
cufflinks 3.35504 0.0 11.4392   High
cufflinks 0.0900706 0.0 0.425537 Low Low
cufflinks 0.298386 0.0 1.25828 Low  

0 Strain