Gene : Phvul.001G161100 P. vulgaris v2.1
Defline:  (1 of 36) PF05553 - Cotton fibre expressed protein (DUF761) Genomic Order:  1587
Name:  ? Phvul.001G161100 Secondary Identifier:  ? PAC:37168521
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G161100 0.5kb upstream 0.5kb upstream 1031 true Chr01: 41518423-41519453 Phaseolus vulgaris
Phvul.001G161100 0.5kb upstream 0.5kb upstream 500 false Chr01: 41518954-41519453 Phaseolus vulgaris
Phvul.001G161100 0.5kb downstream 0.5kb downstream 1031 true Chr01: 41517923-41518953 Phaseolus vulgaris
Phvul.001G161100 0.5kb downstream 0.5kb downstream 500 false Chr01: 41517923-41518422 Phaseolus vulgaris
Phvul.001G161100 1.0kb upstream 1.0kb upstream 1531 true Chr01: 41518423-41519953 Phaseolus vulgaris
Phvul.001G161100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 41518954-41519953 Phaseolus vulgaris
Phvul.001G161100 1.0kb downstream 1.0kb downstream 1531 true Chr01: 41517423-41518953 Phaseolus vulgaris
Phvul.001G161100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 41517423-41518422 Phaseolus vulgaris
Phvul.001G161100 2.0kb upstream 2.0kb upstream 2531 true Chr01: 41518423-41520953 Phaseolus vulgaris
Phvul.001G161100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 41518954-41520953 Phaseolus vulgaris
Phvul.001G161100 2.0kb downstream 2.0kb downstream 2531 true Chr01: 41516423-41518953 Phaseolus vulgaris
Phvul.001G161100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 41516423-41518422 Phaseolus vulgaris
Phvul.001G161100 5.0kb upstream 5.0kb upstream 5531 true Chr01: 41518423-41523953 Phaseolus vulgaris
Phvul.001G161100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 41518954-41523953 Phaseolus vulgaris
Phvul.001G161100 5.0kb downstream 5.0kb downstream 5531 true Chr01: 41513423-41518953 Phaseolus vulgaris
Phvul.001G161100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 41513423-41518422 Phaseolus vulgaris
Phvul.001G161100 10.0kb upstream 10.0kb upstream 10531 true Chr01: 41518423-41528953 Phaseolus vulgaris
Phvul.001G161100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 41518954-41528953 Phaseolus vulgaris
Phvul.001G161100 10.0kb downstream 10.0kb downstream 10531 true Chr01: 41508423-41518953 Phaseolus vulgaris
Phvul.001G161100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 41508423-41518422 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300567 5265 Fabidae View MSA
124070799 5270 Rosid View MSA
123747839 5271 Pentapetalae View MSA
122792637 5272 Eudicot View MSA
122050449 5273 Angiosperm View MSA
121311915 5274 Embryophyte View MSA
123349144 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.8832 0.0 43.0575    
cufflinks 5.11862 0.0 17.6791   Low
cufflinks 7.78581 0.0 25.5774    
cufflinks 12.3861 0.0 38.5805    
cufflinks 20.8977 0.0 62.2546   High
cufflinks 5.35542 0.0 18.3936   Low
cufflinks 12.7931 0.0 39.8502    
cufflinks 6.09014 0.0 20.6251    
cufflinks 7.45871 0.0 24.6543    
cufflinks 10.5025 0.0 33.6469    
cufflinks 25.8154 0.0 74.5092   High

0 Strain