Gene : Phvul.001G150300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11514:SF28 - TRANSCRIPTION FACTOR TT8 Genomic Order:  1478
Name:  ? Phvul.001G150300 Secondary Identifier:  ? PAC:37168078
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G150300 0.5kb upstream 0.5kb upstream 14532 true Chr01: 39775381-39789912 Phaseolus vulgaris
Phvul.001G150300 0.5kb upstream 0.5kb upstream 500 false Chr01: 39775381-39775880 Phaseolus vulgaris
Phvul.001G150300 0.5kb downstream 0.5kb downstream 14532 true Chr01: 39775881-39790412 Phaseolus vulgaris
Phvul.001G150300 0.5kb downstream 0.5kb downstream 500 false Chr01: 39789913-39790412 Phaseolus vulgaris
Phvul.001G150300 1.0kb upstream 1.0kb upstream 15032 true Chr01: 39774881-39789912 Phaseolus vulgaris
Phvul.001G150300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 39774881-39775880 Phaseolus vulgaris
Phvul.001G150300 1.0kb downstream 1.0kb downstream 15032 true Chr01: 39775881-39790912 Phaseolus vulgaris
Phvul.001G150300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 39789913-39790912 Phaseolus vulgaris
Phvul.001G150300 2.0kb upstream 2.0kb upstream 16032 true Chr01: 39773881-39789912 Phaseolus vulgaris
Phvul.001G150300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 39773881-39775880 Phaseolus vulgaris
Phvul.001G150300 2.0kb downstream 2.0kb downstream 16032 true Chr01: 39775881-39791912 Phaseolus vulgaris
Phvul.001G150300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 39789913-39791912 Phaseolus vulgaris
Phvul.001G150300 5.0kb upstream 5.0kb upstream 19032 true Chr01: 39770881-39789912 Phaseolus vulgaris
Phvul.001G150300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 39770881-39775880 Phaseolus vulgaris
Phvul.001G150300 5.0kb downstream 5.0kb downstream 19032 true Chr01: 39775881-39794912 Phaseolus vulgaris
Phvul.001G150300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 39789913-39794912 Phaseolus vulgaris
Phvul.001G150300 10.0kb upstream 10.0kb upstream 24032 true Chr01: 39765881-39789912 Phaseolus vulgaris
Phvul.001G150300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 39765881-39775880 Phaseolus vulgaris
Phvul.001G150300 10.0kb downstream 10.0kb downstream 24032 true Chr01: 39775881-39799912 Phaseolus vulgaris
Phvul.001G150300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 39789913-39799912 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309352 5265 Fabidae View MSA
124064809 5270 Rosid View MSA
123747092 5271 Pentapetalae View MSA
122794545 5272 Eudicot View MSA
122045232 5273 Angiosperm View MSA
121347746 5274 Embryophyte View MSA
123380612 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.181836 0.0 0.901232 Low  
cufflinks 1.1528 0.0 4.11327    
cufflinks 0.176695 0.0 0.858708 Low  
cufflinks 0.24079 0.0 1.13085 Low  
cufflinks 2.11346 0.0 8.50247   High
cufflinks 0.162954 0.0 0.636347 Low  
cufflinks 0.663336 0.0 2.72987    
cufflinks 0.131724 0.0 0.522568 Low Low
cufflinks 0.201798 0.0 0.949669 Low  
cufflinks 1.5867 0.0 5.2286   High
cufflinks 1.70881 0.0 5.56369   High

0 Strain