Gene : Phvul.001G154300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR24362:SF218 - SERINE/THREONINE-PROTEIN KINASE NEK4 Genomic Order:  1518
Name:  ? Phvul.001G154300 Secondary Identifier:  ? PAC:37168868
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G154300 0.5kb upstream 0.5kb upstream 7726 true Chr01: 40485449-40493174 Phaseolus vulgaris
Phvul.001G154300 0.5kb upstream 0.5kb upstream 500 false Chr01: 40485449-40485948 Phaseolus vulgaris
Phvul.001G154300 0.5kb downstream 0.5kb downstream 7726 true Chr01: 40485949-40493674 Phaseolus vulgaris
Phvul.001G154300 0.5kb downstream 0.5kb downstream 500 false Chr01: 40493175-40493674 Phaseolus vulgaris
Phvul.001G154300 1.0kb upstream 1.0kb upstream 8226 true Chr01: 40484949-40493174 Phaseolus vulgaris
Phvul.001G154300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 40484949-40485948 Phaseolus vulgaris
Phvul.001G154300 1.0kb downstream 1.0kb downstream 8226 true Chr01: 40485949-40494174 Phaseolus vulgaris
Phvul.001G154300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 40493175-40494174 Phaseolus vulgaris
Phvul.001G154300 2.0kb upstream 2.0kb upstream 9226 true Chr01: 40483949-40493174 Phaseolus vulgaris
Phvul.001G154300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 40483949-40485948 Phaseolus vulgaris
Phvul.001G154300 2.0kb downstream 2.0kb downstream 9226 true Chr01: 40485949-40495174 Phaseolus vulgaris
Phvul.001G154300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 40493175-40495174 Phaseolus vulgaris
Phvul.001G154300 5.0kb upstream 5.0kb upstream 12226 true Chr01: 40480949-40493174 Phaseolus vulgaris
Phvul.001G154300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 40480949-40485948 Phaseolus vulgaris
Phvul.001G154300 5.0kb downstream 5.0kb downstream 12226 true Chr01: 40485949-40498174 Phaseolus vulgaris
Phvul.001G154300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 40493175-40498174 Phaseolus vulgaris
Phvul.001G154300 10.0kb upstream 10.0kb upstream 17226 true Chr01: 40475949-40493174 Phaseolus vulgaris
Phvul.001G154300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 40475949-40485948 Phaseolus vulgaris
Phvul.001G154300 10.0kb downstream 10.0kb downstream 17226 true Chr01: 40485949-40503174 Phaseolus vulgaris
Phvul.001G154300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 40493175-40503174 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296779 5265 Fabidae View MSA
124070127 5270 Rosid View MSA
123743821 5271 Pentapetalae View MSA
122789481 5272 Eudicot View MSA
122043022 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121310065 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.60396 0.0 7.17831    
cufflinks 1.64871 0.0 8.79762    
cufflinks 0.645705 0.0 2.8203   Low
cufflinks 1.89279 0.0 8.12269    
cufflinks 7.18589 0.0 26.3344    
cufflinks 8.41406 0.0 29.4219    
cufflinks 12.5847 0.0 42.2708   High
cufflinks 8.94133 0.0 31.1303    
cufflinks 7.74433 0.0 28.2183    
cufflinks 3.03926 0.0 11.8072    
cufflinks 7.7874 0.0 27.9938    

0 Strain