Gene : Phvul.001G140500 P. vulgaris v2.1
Defline:  (1 of 2) K16810 - TBCC domain-containing protein 1 (TBCCD1) Genomic Order:  1380
Name:  ? Phvul.001G140500 Secondary Identifier:  ? PAC:37168163
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G140500 0.5kb upstream 0.5kb upstream 8505 true Chr01: 38257696-38266200 Phaseolus vulgaris
Phvul.001G140500 0.5kb upstream 0.5kb upstream 500 false Chr01: 38257696-38258195 Phaseolus vulgaris
Phvul.001G140500 0.5kb downstream 0.5kb downstream 8505 true Chr01: 38258196-38266700 Phaseolus vulgaris
Phvul.001G140500 0.5kb downstream 0.5kb downstream 500 false Chr01: 38266201-38266700 Phaseolus vulgaris
Phvul.001G140500 1.0kb upstream 1.0kb upstream 9005 true Chr01: 38257196-38266200 Phaseolus vulgaris
Phvul.001G140500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 38257196-38258195 Phaseolus vulgaris
Phvul.001G140500 1.0kb downstream 1.0kb downstream 9005 true Chr01: 38258196-38267200 Phaseolus vulgaris
Phvul.001G140500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 38266201-38267200 Phaseolus vulgaris
Phvul.001G140500 2.0kb upstream 2.0kb upstream 10005 true Chr01: 38256196-38266200 Phaseolus vulgaris
Phvul.001G140500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 38256196-38258195 Phaseolus vulgaris
Phvul.001G140500 2.0kb downstream 2.0kb downstream 10005 true Chr01: 38258196-38268200 Phaseolus vulgaris
Phvul.001G140500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 38266201-38268200 Phaseolus vulgaris
Phvul.001G140500 5.0kb upstream 5.0kb upstream 13005 true Chr01: 38253196-38266200 Phaseolus vulgaris
Phvul.001G140500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 38253196-38258195 Phaseolus vulgaris
Phvul.001G140500 5.0kb downstream 5.0kb downstream 13005 true Chr01: 38258196-38271200 Phaseolus vulgaris
Phvul.001G140500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 38266201-38271200 Phaseolus vulgaris
Phvul.001G140500 10.0kb upstream 10.0kb upstream 18005 true Chr01: 38248196-38266200 Phaseolus vulgaris
Phvul.001G140500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 38248196-38258195 Phaseolus vulgaris
Phvul.001G140500 10.0kb downstream 10.0kb downstream 18005 true Chr01: 38258196-38276200 Phaseolus vulgaris
Phvul.001G140500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 38266201-38276200 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309249 5265 Fabidae View MSA
124060607 5270 Rosid View MSA
123737607 5271 Pentapetalae View MSA
122797393 5272 Eudicot View MSA
122043018 5273 Angiosperm View MSA
121349470 5274 Embryophyte View MSA
123427558 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.9954 0.0 51.6887   Low
cufflinks 26.3725 0.0 68.3244    
cufflinks 20.4981 0.0 52.9867   Low
cufflinks 25.6195 0.0 66.3489    
cufflinks 24.1633 0.0 62.499    
cufflinks 22.5456 0.0 58.2856    
cufflinks 23.3352 0.0 60.3446    
cufflinks 22.692 0.0 58.6697    
cufflinks 30.7809 0.0 80.0556 High High
cufflinks 27.5453 0.0 71.4415    
cufflinks 30.3834 0.0 78.9645   High

0 Strain