Gene : Phvul.001G142000 P. vulgaris v2.1
Defline:  (1 of 3) PTHR33493:SF2 - LATE EMBRYOGENESIS ABUNDANT PROTEIN 4-5 Genomic Order:  1396
Name:  ? Phvul.001G142000 Secondary Identifier:  ? PAC:37170037
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G142000 0.5kb upstream 0.5kb upstream 1377 true Chr01: 38493773-38495149 Phaseolus vulgaris
Phvul.001G142000 0.5kb upstream 0.5kb upstream 500 false Chr01: 38494650-38495149 Phaseolus vulgaris
Phvul.001G142000 0.5kb downstream 0.5kb downstream 1377 true Chr01: 38493273-38494649 Phaseolus vulgaris
Phvul.001G142000 0.5kb downstream 0.5kb downstream 500 false Chr01: 38493273-38493772 Phaseolus vulgaris
Phvul.001G142000 1.0kb upstream 1.0kb upstream 1877 true Chr01: 38493773-38495649 Phaseolus vulgaris
Phvul.001G142000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 38494650-38495649 Phaseolus vulgaris
Phvul.001G142000 1.0kb downstream 1.0kb downstream 1877 true Chr01: 38492773-38494649 Phaseolus vulgaris
Phvul.001G142000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 38492773-38493772 Phaseolus vulgaris
Phvul.001G142000 2.0kb upstream 2.0kb upstream 2877 true Chr01: 38493773-38496649 Phaseolus vulgaris
Phvul.001G142000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 38494650-38496649 Phaseolus vulgaris
Phvul.001G142000 2.0kb downstream 2.0kb downstream 2877 true Chr01: 38491773-38494649 Phaseolus vulgaris
Phvul.001G142000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 38491773-38493772 Phaseolus vulgaris
Phvul.001G142000 5.0kb upstream 5.0kb upstream 5877 true Chr01: 38493773-38499649 Phaseolus vulgaris
Phvul.001G142000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 38494650-38499649 Phaseolus vulgaris
Phvul.001G142000 5.0kb downstream 5.0kb downstream 5877 true Chr01: 38488773-38494649 Phaseolus vulgaris
Phvul.001G142000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 38488773-38493772 Phaseolus vulgaris
Phvul.001G142000 10.0kb upstream 10.0kb upstream 10877 true Chr01: 38493773-38504649 Phaseolus vulgaris
Phvul.001G142000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 38494650-38504649 Phaseolus vulgaris
Phvul.001G142000 10.0kb downstream 10.0kb downstream 10877 true Chr01: 38483773-38494649 Phaseolus vulgaris
Phvul.001G142000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 38483773-38493772 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297101 5265 Fabidae View MSA
124073958 5270 Rosid View MSA
123749159 5271 Pentapetalae View MSA
122794913 5272 Eudicot View MSA
122046443 5273 Angiosperm View MSA
121349982 5274 Embryophyte View MSA
123381528 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.57795 0.0 11.594   High
cufflinks 0.596276 0.0 2.29027    
cufflinks 0.0701194 0.0 0.327507 Low Low
cufflinks 1.9076 0.0 6.58969    
cufflinks 0.724963 0.0 2.75496    
cufflinks 0.575113 0.0 2.21383    
cufflinks 1.56604 0.0 5.46341    
cufflinks 2.397 0.0 8.00122    
cufflinks 1.22893 0.0 4.38773    
cufflinks 0.363614 0.0 1.45552    
cufflinks 1.94503 0.0 6.70073    

0 Strain