Gene : Phvul.001G143100 P. vulgaris v2.1
Defline:  (1 of 3) PTHR33493:SF2 - LATE EMBRYOGENESIS ABUNDANT PROTEIN 4-5 Genomic Order:  1408
Name:  ? Phvul.001G143100 Secondary Identifier:  ? PAC:37169467
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G143100 0.5kb upstream 0.5kb upstream 1326 true Chr01: 38642006-38643331 Phaseolus vulgaris
Phvul.001G143100 0.5kb upstream 0.5kb upstream 500 false Chr01: 38642832-38643331 Phaseolus vulgaris
Phvul.001G143100 0.5kb downstream 0.5kb downstream 1326 true Chr01: 38641506-38642831 Phaseolus vulgaris
Phvul.001G143100 0.5kb downstream 0.5kb downstream 500 false Chr01: 38641506-38642005 Phaseolus vulgaris
Phvul.001G143100 1.0kb upstream 1.0kb upstream 1826 true Chr01: 38642006-38643831 Phaseolus vulgaris
Phvul.001G143100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 38642832-38643831 Phaseolus vulgaris
Phvul.001G143100 1.0kb downstream 1.0kb downstream 1826 true Chr01: 38641006-38642831 Phaseolus vulgaris
Phvul.001G143100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 38641006-38642005 Phaseolus vulgaris
Phvul.001G143100 2.0kb upstream 2.0kb upstream 2826 true Chr01: 38642006-38644831 Phaseolus vulgaris
Phvul.001G143100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 38642832-38644831 Phaseolus vulgaris
Phvul.001G143100 2.0kb downstream 2.0kb downstream 2826 true Chr01: 38640006-38642831 Phaseolus vulgaris
Phvul.001G143100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 38640006-38642005 Phaseolus vulgaris
Phvul.001G143100 5.0kb upstream 5.0kb upstream 5826 true Chr01: 38642006-38647831 Phaseolus vulgaris
Phvul.001G143100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 38642832-38647831 Phaseolus vulgaris
Phvul.001G143100 5.0kb downstream 5.0kb downstream 5826 true Chr01: 38637006-38642831 Phaseolus vulgaris
Phvul.001G143100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 38637006-38642005 Phaseolus vulgaris
Phvul.001G143100 10.0kb upstream 10.0kb upstream 10826 true Chr01: 38642006-38652831 Phaseolus vulgaris
Phvul.001G143100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 38642832-38652831 Phaseolus vulgaris
Phvul.001G143100 10.0kb downstream 10.0kb downstream 10826 true Chr01: 38632006-38642831 Phaseolus vulgaris
Phvul.001G143100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 38632006-38642005 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300333 5265 Fabidae View MSA
124073958 5270 Rosid View MSA
123749159 5271 Pentapetalae View MSA
122794913 5272 Eudicot View MSA
122046443 5273 Angiosperm View MSA
121349982 5274 Embryophyte View MSA
123381528 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.28966 0.0 7.83206   High
cufflinks 1.20735 0.0 4.37553    
cufflinks 1.08719 0.0 4.00957    
cufflinks 0.467805 0.0 1.82708 Low  
cufflinks 0.0644765 0.0 0.302753 Low Low
cufflinks 0.0980641 0.0 0.44011 Low Low
cufflinks 0.407058 0.0 1.59536 Low  
cufflinks 0.294275 0.0 1.18924 Low  
cufflinks 0.271389 0.0 1.09532 Low  
cufflinks 0.495887 0.0 1.94109    
cufflinks 2.22176 0.0 7.52094   High

0 Strain