Gene : Phvul.001G146700 P. vulgaris v2.1
Defline:  (1 of 2) PTHR13268:SF2 - AUTOPHAGY-RELATED PROTEIN 18G Genomic Order:  1442
Name:  ? Phvul.001G146700 Secondary Identifier:  ? PAC:37168211
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G146700 0.5kb upstream 0.5kb upstream 6971 true Chr01: 39328927-39335897 Phaseolus vulgaris
Phvul.001G146700 0.5kb upstream 0.5kb upstream 500 false Chr01: 39335398-39335897 Phaseolus vulgaris
Phvul.001G146700 0.5kb downstream 0.5kb downstream 6971 true Chr01: 39328427-39335397 Phaseolus vulgaris
Phvul.001G146700 0.5kb downstream 0.5kb downstream 500 false Chr01: 39328427-39328926 Phaseolus vulgaris
Phvul.001G146700 1.0kb upstream 1.0kb upstream 7471 true Chr01: 39328927-39336397 Phaseolus vulgaris
Phvul.001G146700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 39335398-39336397 Phaseolus vulgaris
Phvul.001G146700 1.0kb downstream 1.0kb downstream 7471 true Chr01: 39327927-39335397 Phaseolus vulgaris
Phvul.001G146700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 39327927-39328926 Phaseolus vulgaris
Phvul.001G146700 2.0kb upstream 2.0kb upstream 8471 true Chr01: 39328927-39337397 Phaseolus vulgaris
Phvul.001G146700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 39335398-39337397 Phaseolus vulgaris
Phvul.001G146700 2.0kb downstream 2.0kb downstream 8471 true Chr01: 39326927-39335397 Phaseolus vulgaris
Phvul.001G146700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 39326927-39328926 Phaseolus vulgaris
Phvul.001G146700 5.0kb upstream 5.0kb upstream 11471 true Chr01: 39328927-39340397 Phaseolus vulgaris
Phvul.001G146700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 39335398-39340397 Phaseolus vulgaris
Phvul.001G146700 5.0kb downstream 5.0kb downstream 11471 true Chr01: 39323927-39335397 Phaseolus vulgaris
Phvul.001G146700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 39323927-39328926 Phaseolus vulgaris
Phvul.001G146700 10.0kb upstream 10.0kb upstream 16471 true Chr01: 39328927-39345397 Phaseolus vulgaris
Phvul.001G146700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 39335398-39345397 Phaseolus vulgaris
Phvul.001G146700 10.0kb downstream 10.0kb downstream 16471 true Chr01: 39318927-39335397 Phaseolus vulgaris
Phvul.001G146700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 39318927-39328926 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305395 5265 Fabidae View MSA
124066220 5270 Rosid View MSA
123744735 5271 Pentapetalae View MSA
122790134 5272 Eudicot View MSA
122047922 5273 Angiosperm View MSA
121350059 5274 Embryophyte View MSA
123424091 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.47776 0.0 9.83538    
cufflinks 2.63921 0.0 12.0713    
cufflinks 4.63987 0.0 16.4552   High
cufflinks 1.78253 0.0 6.81827   Low
cufflinks 3.37262 0.0 12.6724    
cufflinks 2.4847 0.0 10.135    
cufflinks 2.45784 0.0 8.60265    
cufflinks 1.84415 0.0 8.03117   Low
cufflinks 3.50407 0.0 14.7376    
cufflinks 6.30395 0.0 21.5982   High
cufflinks 2.42986 0.0 10.0549    

0 Strain