Gene : Phvul.001G146000 P. vulgaris v2.1
Defline:  (1 of 29) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  1435
Name:  ? Phvul.001G146000 Secondary Identifier:  ? PAC:37168753
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G146000 0.5kb upstream 0.5kb upstream 3195 true Chr01: 39261878-39265072 Phaseolus vulgaris
Phvul.001G146000 0.5kb upstream 0.5kb upstream 500 false Chr01: 39264573-39265072 Phaseolus vulgaris
Phvul.001G146000 0.5kb downstream 0.5kb downstream 3195 true Chr01: 39261378-39264572 Phaseolus vulgaris
Phvul.001G146000 0.5kb downstream 0.5kb downstream 500 false Chr01: 39261378-39261877 Phaseolus vulgaris
Phvul.001G146000 1.0kb upstream 1.0kb upstream 3695 true Chr01: 39261878-39265572 Phaseolus vulgaris
Phvul.001G146000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 39264573-39265572 Phaseolus vulgaris
Phvul.001G146000 1.0kb downstream 1.0kb downstream 3695 true Chr01: 39260878-39264572 Phaseolus vulgaris
Phvul.001G146000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 39260878-39261877 Phaseolus vulgaris
Phvul.001G146000 2.0kb upstream 2.0kb upstream 4695 true Chr01: 39261878-39266572 Phaseolus vulgaris
Phvul.001G146000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 39264573-39266572 Phaseolus vulgaris
Phvul.001G146000 2.0kb downstream 2.0kb downstream 4695 true Chr01: 39259878-39264572 Phaseolus vulgaris
Phvul.001G146000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 39259878-39261877 Phaseolus vulgaris
Phvul.001G146000 5.0kb upstream 5.0kb upstream 7695 true Chr01: 39261878-39269572 Phaseolus vulgaris
Phvul.001G146000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 39264573-39269572 Phaseolus vulgaris
Phvul.001G146000 5.0kb downstream 5.0kb downstream 7695 true Chr01: 39256878-39264572 Phaseolus vulgaris
Phvul.001G146000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 39256878-39261877 Phaseolus vulgaris
Phvul.001G146000 10.0kb upstream 10.0kb upstream 12695 true Chr01: 39261878-39274572 Phaseolus vulgaris
Phvul.001G146000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 39264573-39274572 Phaseolus vulgaris
Phvul.001G146000 10.0kb downstream 10.0kb downstream 12695 true Chr01: 39251878-39264572 Phaseolus vulgaris
Phvul.001G146000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 39251878-39261877 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303262 5265 Fabidae View MSA
124072628 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.326605 0.0 1.1932 Low  
cufflinks 0.702202 0.0 2.38056   High
cufflinks 0.0602251 0.0 0.252867 Low Low
cufflinks 0.503551 0.0 1.78414 Low  
cufflinks 0.296409 0.0 1.09794 Low  
cufflinks 0.208147 0.0 0.791501 Low  
cufflinks 0.421086 0.0 1.50973 Low  
cufflinks 0.408037 0.0 1.4632 Low  
cufflinks 0.379841 0.0 1.37854 Low  
cufflinks 0.679937 0.0 2.31174   High
cufflinks 0.319828 0.0 1.17674 Low  

0 Strain