Gene : Phvul.001G148400 P. vulgaris v2.1
Defline:  (1 of 12) K10523 - speckle-type POZ protein (SPOP) Genomic Order:  1459
Name:  ? Phvul.001G148400 Secondary Identifier:  ? PAC:37169821
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G148400 0.5kb upstream 0.5kb upstream 4927 true Chr01: 39532964-39537890 Phaseolus vulgaris
Phvul.001G148400 0.5kb upstream 0.5kb upstream 500 false Chr01: 39532964-39533463 Phaseolus vulgaris
Phvul.001G148400 0.5kb downstream 0.5kb downstream 4927 true Chr01: 39533464-39538390 Phaseolus vulgaris
Phvul.001G148400 0.5kb downstream 0.5kb downstream 500 false Chr01: 39537891-39538390 Phaseolus vulgaris
Phvul.001G148400 1.0kb upstream 1.0kb upstream 5427 true Chr01: 39532464-39537890 Phaseolus vulgaris
Phvul.001G148400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 39532464-39533463 Phaseolus vulgaris
Phvul.001G148400 1.0kb downstream 1.0kb downstream 5427 true Chr01: 39533464-39538890 Phaseolus vulgaris
Phvul.001G148400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 39537891-39538890 Phaseolus vulgaris
Phvul.001G148400 2.0kb upstream 2.0kb upstream 6427 true Chr01: 39531464-39537890 Phaseolus vulgaris
Phvul.001G148400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 39531464-39533463 Phaseolus vulgaris
Phvul.001G148400 2.0kb downstream 2.0kb downstream 6427 true Chr01: 39533464-39539890 Phaseolus vulgaris
Phvul.001G148400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 39537891-39539890 Phaseolus vulgaris
Phvul.001G148400 5.0kb upstream 5.0kb upstream 9427 true Chr01: 39528464-39537890 Phaseolus vulgaris
Phvul.001G148400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 39528464-39533463 Phaseolus vulgaris
Phvul.001G148400 5.0kb downstream 5.0kb downstream 9427 true Chr01: 39533464-39542890 Phaseolus vulgaris
Phvul.001G148400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 39537891-39542890 Phaseolus vulgaris
Phvul.001G148400 10.0kb upstream 10.0kb upstream 14427 true Chr01: 39523464-39537890 Phaseolus vulgaris
Phvul.001G148400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 39523464-39533463 Phaseolus vulgaris
Phvul.001G148400 10.0kb downstream 10.0kb downstream 14427 true Chr01: 39533464-39547890 Phaseolus vulgaris
Phvul.001G148400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 39537891-39547890 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040960 5273 Angiosperm View MSA
122309857 5265 Fabidae View MSA
124064148 5270 Rosid View MSA
123743633 5271 Pentapetalae View MSA
122791318 5272 Eudicot View MSA
121348457 5274 Embryophyte View MSA
123428082 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 47.3668 0.0 125.354 High High
cufflinks 42.0698 0.0 110.431 High  
cufflinks 29.1871 0.0 75.5494   Low
cufflinks 40.2628 0.0 105.409 High  
cufflinks 38.4212 0.0 100.277 High  
cufflinks 37.8987 0.0 98.9617 High  
cufflinks 32.7332 0.0 85.0598 High  
cufflinks 29.9195 0.0 77.5425 High Low
cufflinks 37.7531 0.0 98.5982 High  
cufflinks 40.9336 0.0 107.286 High  
cufflinks 46.2707 0.0 122.071 High High

0 Strain