Gene : Phvul.001G135100 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31375:SF3 - POLYGALACTURONASE ADPG1-RELATED Genomic Order:  1323
Name:  ? Phvul.001G135100 Secondary Identifier:  ? PAC:37169468
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1081 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G135100 0.5kb upstream 0.5kb upstream 3162 true Chr01: 37340540-37343701 Phaseolus vulgaris
Phvul.001G135100 0.5kb upstream 0.5kb upstream 500 false Chr01: 37343202-37343701 Phaseolus vulgaris
Phvul.001G135100 0.5kb downstream 0.5kb downstream 3162 true Chr01: 37340040-37343201 Phaseolus vulgaris
Phvul.001G135100 0.5kb downstream 0.5kb downstream 500 false Chr01: 37340040-37340539 Phaseolus vulgaris
Phvul.001G135100 1.0kb upstream 1.0kb upstream 3662 true Chr01: 37340540-37344201 Phaseolus vulgaris
Phvul.001G135100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 37343202-37344201 Phaseolus vulgaris
Phvul.001G135100 1.0kb downstream 1.0kb downstream 3662 true Chr01: 37339540-37343201 Phaseolus vulgaris
Phvul.001G135100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 37339540-37340539 Phaseolus vulgaris
Phvul.001G135100 2.0kb upstream 2.0kb upstream 4662 true Chr01: 37340540-37345201 Phaseolus vulgaris
Phvul.001G135100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 37343202-37345201 Phaseolus vulgaris
Phvul.001G135100 2.0kb downstream 2.0kb downstream 4662 true Chr01: 37338540-37343201 Phaseolus vulgaris
Phvul.001G135100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 37338540-37340539 Phaseolus vulgaris
Phvul.001G135100 5.0kb upstream 5.0kb upstream 7662 true Chr01: 37340540-37348201 Phaseolus vulgaris
Phvul.001G135100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 37343202-37348201 Phaseolus vulgaris
Phvul.001G135100 5.0kb downstream 5.0kb downstream 7662 true Chr01: 37335540-37343201 Phaseolus vulgaris
Phvul.001G135100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 37335540-37340539 Phaseolus vulgaris
Phvul.001G135100 10.0kb upstream 10.0kb upstream 12662 true Chr01: 37340540-37353201 Phaseolus vulgaris
Phvul.001G135100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 37343202-37353201 Phaseolus vulgaris
Phvul.001G135100 10.0kb downstream 10.0kb downstream 12662 true Chr01: 37330540-37343201 Phaseolus vulgaris
Phvul.001G135100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 37330540-37340539 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314291 5265 Fabidae View MSA
124073768 5270 Rosid View MSA
123750458 5271 Pentapetalae View MSA
122794874 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.243774 0.0 0.963682 Low  
cufflinks 3.96497 0.0 15.2515    
cufflinks 0.15417 0.0 0.63484 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 6.65273 0.0 23.0442    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0496599 0.0 0.2362 Low  
cufflinks 0.0174131 0.0 0.102039 Low Low
cufflinks 0.134988 0.0 0.561961 Low  
cufflinks 75.2127 0.0 258.582 High High
cufflinks 2.98055 0.0 12.5256    

0 Strain