Gene : Phvul.001G138100 P. vulgaris v2.1
Defline:  (1 of 2) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Genomic Order:  1351
Name:  ? Phvul.001G138100 Secondary Identifier:  ? PAC:37169086
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6689 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G138100 0.5kb upstream 0.5kb upstream 1229 true Chr01: 37860279-37861507 Phaseolus vulgaris
Phvul.001G138100 0.5kb upstream 0.5kb upstream 500 false Chr01: 37861008-37861507 Phaseolus vulgaris
Phvul.001G138100 0.5kb downstream 0.5kb downstream 1229 true Chr01: 37859779-37861007 Phaseolus vulgaris
Phvul.001G138100 0.5kb downstream 0.5kb downstream 500 false Chr01: 37859779-37860278 Phaseolus vulgaris
Phvul.001G138100 1.0kb upstream 1.0kb upstream 1729 true Chr01: 37860279-37862007 Phaseolus vulgaris
Phvul.001G138100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 37861008-37862007 Phaseolus vulgaris
Phvul.001G138100 1.0kb downstream 1.0kb downstream 1729 true Chr01: 37859279-37861007 Phaseolus vulgaris
Phvul.001G138100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 37859279-37860278 Phaseolus vulgaris
Phvul.001G138100 2.0kb upstream 2.0kb upstream 2729 true Chr01: 37860279-37863007 Phaseolus vulgaris
Phvul.001G138100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 37861008-37863007 Phaseolus vulgaris
Phvul.001G138100 2.0kb downstream 2.0kb downstream 2729 true Chr01: 37858279-37861007 Phaseolus vulgaris
Phvul.001G138100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 37858279-37860278 Phaseolus vulgaris
Phvul.001G138100 5.0kb upstream 5.0kb upstream 5729 true Chr01: 37860279-37866007 Phaseolus vulgaris
Phvul.001G138100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 37861008-37866007 Phaseolus vulgaris
Phvul.001G138100 5.0kb downstream 5.0kb downstream 5729 true Chr01: 37855279-37861007 Phaseolus vulgaris
Phvul.001G138100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 37855279-37860278 Phaseolus vulgaris
Phvul.001G138100 10.0kb upstream 10.0kb upstream 10729 true Chr01: 37860279-37871007 Phaseolus vulgaris
Phvul.001G138100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 37861008-37871007 Phaseolus vulgaris
Phvul.001G138100 10.0kb downstream 10.0kb downstream 10729 true Chr01: 37850279-37861007 Phaseolus vulgaris
Phvul.001G138100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 37850279-37860278 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
122306771 5265 Fabidae View MSA
124064519 5270 Rosid View MSA
123739625 5271 Pentapetalae View MSA
122788641 5272 Eudicot View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.80565 0.0 6.58784   High
cufflinks 1.37509 0.0 5.13871    
cufflinks 1.38018 0.0 5.14093    
cufflinks 1.42028 0.0 5.31346    
cufflinks 1.20149 0.0 4.5576    
cufflinks 1.54264 0.0 5.70464    
cufflinks 1.00392 0.0 3.84756   Low
cufflinks 1.20178 0.0 4.52169    
cufflinks 1.19055 0.0 4.50747    
cufflinks 2.19622 0.0 7.89205   High
cufflinks 0.857506 0.0 3.33933   Low

0 Strain