Gene : Phvul.001G137700 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31344:SF4 - NUCLEOLAR PROTEIN GAR2-LIKE PROTEIN Genomic Order:  1349
Name:  ? Phvul.001G137700 Secondary Identifier:  ? PAC:37170715
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G137700 0.5kb upstream 0.5kb upstream 6678 true Chr01: 37816444-37823121 Phaseolus vulgaris
Phvul.001G137700 0.5kb upstream 0.5kb upstream 500 false Chr01: 37822622-37823121 Phaseolus vulgaris
Phvul.001G137700 0.5kb downstream 0.5kb downstream 6678 true Chr01: 37815944-37822621 Phaseolus vulgaris
Phvul.001G137700 0.5kb downstream 0.5kb downstream 500 false Chr01: 37815944-37816443 Phaseolus vulgaris
Phvul.001G137700 1.0kb upstream 1.0kb upstream 7178 true Chr01: 37816444-37823621 Phaseolus vulgaris
Phvul.001G137700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 37822622-37823621 Phaseolus vulgaris
Phvul.001G137700 1.0kb downstream 1.0kb downstream 7178 true Chr01: 37815444-37822621 Phaseolus vulgaris
Phvul.001G137700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 37815444-37816443 Phaseolus vulgaris
Phvul.001G137700 2.0kb upstream 2.0kb upstream 8178 true Chr01: 37816444-37824621 Phaseolus vulgaris
Phvul.001G137700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 37822622-37824621 Phaseolus vulgaris
Phvul.001G137700 2.0kb downstream 2.0kb downstream 8178 true Chr01: 37814444-37822621 Phaseolus vulgaris
Phvul.001G137700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 37814444-37816443 Phaseolus vulgaris
Phvul.001G137700 5.0kb upstream 5.0kb upstream 11178 true Chr01: 37816444-37827621 Phaseolus vulgaris
Phvul.001G137700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 37822622-37827621 Phaseolus vulgaris
Phvul.001G137700 5.0kb downstream 5.0kb downstream 11178 true Chr01: 37811444-37822621 Phaseolus vulgaris
Phvul.001G137700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 37811444-37816443 Phaseolus vulgaris
Phvul.001G137700 10.0kb upstream 10.0kb upstream 16178 true Chr01: 37816444-37832621 Phaseolus vulgaris
Phvul.001G137700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 37822622-37832621 Phaseolus vulgaris
Phvul.001G137700 10.0kb downstream 10.0kb downstream 16178 true Chr01: 37806444-37822621 Phaseolus vulgaris
Phvul.001G137700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 37806444-37816443 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304118 5265 Fabidae View MSA
124068078 5270 Rosid View MSA
123737150 5271 Pentapetalae View MSA
122789303 5272 Eudicot View MSA
122047501 5273 Angiosperm View MSA
121349213 5274 Embryophyte View MSA
123425563 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.3267 0.0 6.75322   Low
cufflinks 9.86502 0.0 25.6358    
cufflinks 16.1876 0.0 41.8995    
cufflinks 4.2271 0.0 11.6988   Low
cufflinks 14.9965 0.0 38.7631    
cufflinks 16.7288 0.0 43.309    
cufflinks 20.0506 0.0 52.1736    
cufflinks 10.482 0.0 27.1572    
cufflinks 20.107 0.0 52.2992    
cufflinks 16.2936 0.0 42.1553    
cufflinks 17.9079 0.0 46.3777    

0 Strain