Gene : Phvul.001G123900 P. vulgaris v2.1
Defline:  (1 of 1) 1.4.7.1 - Glutamate synthase (ferredoxin) / Ferredoxin-dependent glutamate synthase Genomic Order:  1208
Name:  ? Phvul.001G123900 Secondary Identifier:  ? PAC:37168568
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris CITRULBIO-PWY Phaseolus vulgaris pathologic  
Pvulgaris GLUTAMINDEG-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-3282 Phaseolus vulgaris pathologic  
Pvulgaris PWY-4341 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6549 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6964 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G123900 0.5kb upstream 0.5kb upstream 29967 true Chr01: 34202665-34232631 Phaseolus vulgaris
Phvul.001G123900 0.5kb upstream 0.5kb upstream 500 false Chr01: 34202665-34203164 Phaseolus vulgaris
Phvul.001G123900 0.5kb downstream 0.5kb downstream 29967 true Chr01: 34203165-34233131 Phaseolus vulgaris
Phvul.001G123900 0.5kb downstream 0.5kb downstream 500 false Chr01: 34232632-34233131 Phaseolus vulgaris
Phvul.001G123900 1.0kb upstream 1.0kb upstream 30467 true Chr01: 34202165-34232631 Phaseolus vulgaris
Phvul.001G123900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 34202165-34203164 Phaseolus vulgaris
Phvul.001G123900 1.0kb downstream 1.0kb downstream 30467 true Chr01: 34203165-34233631 Phaseolus vulgaris
Phvul.001G123900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 34232632-34233631 Phaseolus vulgaris
Phvul.001G123900 2.0kb upstream 2.0kb upstream 31467 true Chr01: 34201165-34232631 Phaseolus vulgaris
Phvul.001G123900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 34201165-34203164 Phaseolus vulgaris
Phvul.001G123900 2.0kb downstream 2.0kb downstream 31467 true Chr01: 34203165-34234631 Phaseolus vulgaris
Phvul.001G123900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 34232632-34234631 Phaseolus vulgaris
Phvul.001G123900 5.0kb upstream 5.0kb upstream 34467 true Chr01: 34198165-34232631 Phaseolus vulgaris
Phvul.001G123900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 34198165-34203164 Phaseolus vulgaris
Phvul.001G123900 5.0kb downstream 5.0kb downstream 34467 true Chr01: 34203165-34237631 Phaseolus vulgaris
Phvul.001G123900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 34232632-34237631 Phaseolus vulgaris
Phvul.001G123900 10.0kb upstream 10.0kb upstream 39467 true Chr01: 34193165-34232631 Phaseolus vulgaris
Phvul.001G123900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 34193165-34203164 Phaseolus vulgaris
Phvul.001G123900 10.0kb downstream 10.0kb downstream 39467 true Chr01: 34203165-34242631 Phaseolus vulgaris
Phvul.001G123900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 34232632-34242631 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041031 5273 Angiosperm View MSA
122301808 5265 Fabidae View MSA
124064283 5270 Rosid View MSA
123736436 5271 Pentapetalae View MSA
122793515 5272 Eudicot View MSA
121351458 5274 Embryophyte View MSA
123425051 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.20544 0.0 23.9154   Low
cufflinks 21.5076 0.0 59.2394    
cufflinks 369.222 0.0 1844.46 High High
cufflinks 8.82379 0.0 22.849   Low
cufflinks 43.7551 0.0 130.647 High  
cufflinks 145.704 0.0 564.518 High High
cufflinks 32.0587 0.0 92.5206 High  
cufflinks 38.8902 0.0 115.692 High  
cufflinks 54.7495 0.0 170.354 High  
cufflinks 75.6551 0.0 249.987 High  
cufflinks 27.3395 0.0 76.9639    

0 Strain