Gene : Phvul.001G126000 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10426//PTHR10426:SF29 - STRICTOSIDINE SYNTHASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1230
Name:  ? Phvul.001G126000 Secondary Identifier:  ? PAC:37169309
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G126000 0.5kb upstream 0.5kb upstream 6836 true Chr01: 34837350-34844185 Phaseolus vulgaris
Phvul.001G126000 0.5kb upstream 0.5kb upstream 500 false Chr01: 34837350-34837849 Phaseolus vulgaris
Phvul.001G126000 0.5kb downstream 0.5kb downstream 6836 true Chr01: 34837850-34844685 Phaseolus vulgaris
Phvul.001G126000 0.5kb downstream 0.5kb downstream 500 false Chr01: 34844186-34844685 Phaseolus vulgaris
Phvul.001G126000 1.0kb upstream 1.0kb upstream 7336 true Chr01: 34836850-34844185 Phaseolus vulgaris
Phvul.001G126000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 34836850-34837849 Phaseolus vulgaris
Phvul.001G126000 1.0kb downstream 1.0kb downstream 7336 true Chr01: 34837850-34845185 Phaseolus vulgaris
Phvul.001G126000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 34844186-34845185 Phaseolus vulgaris
Phvul.001G126000 2.0kb upstream 2.0kb upstream 8336 true Chr01: 34835850-34844185 Phaseolus vulgaris
Phvul.001G126000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 34835850-34837849 Phaseolus vulgaris
Phvul.001G126000 2.0kb downstream 2.0kb downstream 8336 true Chr01: 34837850-34846185 Phaseolus vulgaris
Phvul.001G126000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 34844186-34846185 Phaseolus vulgaris
Phvul.001G126000 5.0kb upstream 5.0kb upstream 11336 true Chr01: 34832850-34844185 Phaseolus vulgaris
Phvul.001G126000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 34832850-34837849 Phaseolus vulgaris
Phvul.001G126000 5.0kb downstream 5.0kb downstream 11336 true Chr01: 34837850-34849185 Phaseolus vulgaris
Phvul.001G126000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 34844186-34849185 Phaseolus vulgaris
Phvul.001G126000 10.0kb upstream 10.0kb upstream 16336 true Chr01: 34827850-34844185 Phaseolus vulgaris
Phvul.001G126000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 34827850-34837849 Phaseolus vulgaris
Phvul.001G126000 10.0kb downstream 10.0kb downstream 16336 true Chr01: 34837850-34854185 Phaseolus vulgaris
Phvul.001G126000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 34844186-34854185 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305822 5265 Fabidae View MSA
124066148 5270 Rosid View MSA
123745070 5271 Pentapetalae View MSA
122791794 5272 Eudicot View MSA
122047810 5273 Angiosperm View MSA
121350347 5274 Embryophyte View MSA
123427583 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.1925 0.0 27.6455   High
cufflinks 1.83087 0.0 5.97239    
cufflinks 9.36849 0.0 25.6197   High
cufflinks 3.68039 0.0 11.2242    
cufflinks 1.09283 0.0 3.81759    
cufflinks 4.44362 0.0 13.0749    
cufflinks 0.257955 0.0 1.01099 Low  
cufflinks 0.100435 0.0 0.423473 Low Low
cufflinks 0.077975 0.0 0.338641 Low Low
cufflinks 1.63757 0.0 5.42543    
cufflinks 1.1571 0.0 3.99463    

0 Strain