Gene : Phvul.001G124400 P. vulgaris v2.1
Defline:  (1 of 1) K06443 - lycopene beta-cyclase (lcyB, crtL1, crtY) Genomic Order:  1214
Name:  ? Phvul.001G124400 Secondary Identifier:  ? PAC:37169802
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris CAROTENOID-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-5943 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5947 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G124400 0.5kb upstream 0.5kb upstream 2024 true Chr01: 34458499-34460522 Phaseolus vulgaris
Phvul.001G124400 0.5kb upstream 0.5kb upstream 500 false Chr01: 34460023-34460522 Phaseolus vulgaris
Phvul.001G124400 0.5kb downstream 0.5kb downstream 2024 true Chr01: 34457999-34460022 Phaseolus vulgaris
Phvul.001G124400 0.5kb downstream 0.5kb downstream 500 false Chr01: 34457999-34458498 Phaseolus vulgaris
Phvul.001G124400 1.0kb upstream 1.0kb upstream 2524 true Chr01: 34458499-34461022 Phaseolus vulgaris
Phvul.001G124400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 34460023-34461022 Phaseolus vulgaris
Phvul.001G124400 1.0kb downstream 1.0kb downstream 2524 true Chr01: 34457499-34460022 Phaseolus vulgaris
Phvul.001G124400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 34457499-34458498 Phaseolus vulgaris
Phvul.001G124400 2.0kb upstream 2.0kb upstream 3524 true Chr01: 34458499-34462022 Phaseolus vulgaris
Phvul.001G124400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 34460023-34462022 Phaseolus vulgaris
Phvul.001G124400 2.0kb downstream 2.0kb downstream 3524 true Chr01: 34456499-34460022 Phaseolus vulgaris
Phvul.001G124400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 34456499-34458498 Phaseolus vulgaris
Phvul.001G124400 5.0kb upstream 5.0kb upstream 6524 true Chr01: 34458499-34465022 Phaseolus vulgaris
Phvul.001G124400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 34460023-34465022 Phaseolus vulgaris
Phvul.001G124400 5.0kb downstream 5.0kb downstream 6524 true Chr01: 34453499-34460022 Phaseolus vulgaris
Phvul.001G124400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 34453499-34458498 Phaseolus vulgaris
Phvul.001G124400 10.0kb upstream 10.0kb upstream 11524 true Chr01: 34458499-34470022 Phaseolus vulgaris
Phvul.001G124400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 34460023-34470022 Phaseolus vulgaris
Phvul.001G124400 10.0kb downstream 10.0kb downstream 11524 true Chr01: 34448499-34460022 Phaseolus vulgaris
Phvul.001G124400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 34448499-34458498 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303951 5265 Fabidae View MSA
124065821 5270 Rosid View MSA
123737595 5271 Pentapetalae View MSA
122786885 5272 Eudicot View MSA
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 48.2022 0.0 126.541 High High
cufflinks 17.9678 0.0 46.8183    
cufflinks 43.557 0.0 113.758 High High
cufflinks 14.2588 0.0 37.7662    
cufflinks 16.5128 0.0 43.2405    
cufflinks 33.5211 0.0 86.8192 High  
cufflinks 8.12297 0.0 22.34   Low
cufflinks 10.1728 0.0 27.389    
cufflinks 7.12574 0.0 19.8936   Low
cufflinks 19.6475 0.0 51.0367    
cufflinks 16.2206 0.0 42.5168    

0 Strain