Gene : Phvul.001G128300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10774:SF61 - ELONGATION DEFECTIVE 1 Genomic Order:  1253
Name:  ? Phvul.001G128300 Secondary Identifier:  ? PAC:37168806
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G128300 0.5kb upstream 0.5kb upstream 6842 true Chr01: 35590179-35597020 Phaseolus vulgaris
Phvul.001G128300 0.5kb upstream 0.5kb upstream 500 false Chr01: 35590179-35590678 Phaseolus vulgaris
Phvul.001G128300 0.5kb downstream 0.5kb downstream 6842 true Chr01: 35590679-35597520 Phaseolus vulgaris
Phvul.001G128300 0.5kb downstream 0.5kb downstream 500 false Chr01: 35597021-35597520 Phaseolus vulgaris
Phvul.001G128300 1.0kb upstream 1.0kb upstream 7342 true Chr01: 35589679-35597020 Phaseolus vulgaris
Phvul.001G128300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 35589679-35590678 Phaseolus vulgaris
Phvul.001G128300 1.0kb downstream 1.0kb downstream 7342 true Chr01: 35590679-35598020 Phaseolus vulgaris
Phvul.001G128300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 35597021-35598020 Phaseolus vulgaris
Phvul.001G128300 2.0kb upstream 2.0kb upstream 8342 true Chr01: 35588679-35597020 Phaseolus vulgaris
Phvul.001G128300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 35588679-35590678 Phaseolus vulgaris
Phvul.001G128300 2.0kb downstream 2.0kb downstream 8342 true Chr01: 35590679-35599020 Phaseolus vulgaris
Phvul.001G128300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 35597021-35599020 Phaseolus vulgaris
Phvul.001G128300 5.0kb upstream 5.0kb upstream 11342 true Chr01: 35585679-35597020 Phaseolus vulgaris
Phvul.001G128300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 35585679-35590678 Phaseolus vulgaris
Phvul.001G128300 5.0kb downstream 5.0kb downstream 11342 true Chr01: 35590679-35602020 Phaseolus vulgaris
Phvul.001G128300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 35597021-35602020 Phaseolus vulgaris
Phvul.001G128300 10.0kb upstream 10.0kb upstream 16342 true Chr01: 35580679-35597020 Phaseolus vulgaris
Phvul.001G128300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 35580679-35590678 Phaseolus vulgaris
Phvul.001G128300 10.0kb downstream 10.0kb downstream 16342 true Chr01: 35590679-35607020 Phaseolus vulgaris
Phvul.001G128300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 35597021-35607020 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307875 5265 Fabidae View MSA
124074098 5270 Rosid View MSA
123747804 5271 Pentapetalae View MSA
122791335 5272 Eudicot View MSA
122042334 5273 Angiosperm View MSA
121345597 5274 Embryophyte View MSA
123428781 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.73237 0.0 13.4507   Low
cufflinks 7.55728 0.0 20.6864    
cufflinks 9.0536 0.0 24.3651    
cufflinks 12.4713 0.0 32.8071   High
cufflinks 8.73331 0.0 23.5573    
cufflinks 9.45519 0.0 25.4007    
cufflinks 9.64687 0.0 25.8403    
cufflinks 9.39691 0.0 25.2039    
cufflinks 11.3904 0.0 30.1987    
cufflinks 10.5822 0.0 28.1543    
cufflinks 10.682 0.0 28.451    

0 Strain