Gene : Phvul.001G115300 P. vulgaris v2.1
Defline:  (1 of 1) 2.1.2.2 - Phosphoribosylglycinamide formyltransferase / Glycinamide ribonucleotide transformylase Genomic Order:  1090
Name:  ? Phvul.001G115300 Secondary Identifier:  ? PAC:37170684
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6121 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6613 Phaseolus vulgaris pathologic  
Pvulgaris PWY-841 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G115300 0.5kb upstream 0.5kb upstream 6294 true Chr01: 29471370-29477663 Phaseolus vulgaris
Phvul.001G115300 0.5kb upstream 0.5kb upstream 500 false Chr01: 29477164-29477663 Phaseolus vulgaris
Phvul.001G115300 0.5kb downstream 0.5kb downstream 6294 true Chr01: 29470870-29477163 Phaseolus vulgaris
Phvul.001G115300 0.5kb downstream 0.5kb downstream 500 false Chr01: 29470870-29471369 Phaseolus vulgaris
Phvul.001G115300 1.0kb upstream 1.0kb upstream 6794 true Chr01: 29471370-29478163 Phaseolus vulgaris
Phvul.001G115300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 29477164-29478163 Phaseolus vulgaris
Phvul.001G115300 1.0kb downstream 1.0kb downstream 6794 true Chr01: 29470370-29477163 Phaseolus vulgaris
Phvul.001G115300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 29470370-29471369 Phaseolus vulgaris
Phvul.001G115300 2.0kb upstream 2.0kb upstream 7794 true Chr01: 29471370-29479163 Phaseolus vulgaris
Phvul.001G115300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 29477164-29479163 Phaseolus vulgaris
Phvul.001G115300 2.0kb downstream 2.0kb downstream 7794 true Chr01: 29469370-29477163 Phaseolus vulgaris
Phvul.001G115300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 29469370-29471369 Phaseolus vulgaris
Phvul.001G115300 5.0kb upstream 5.0kb upstream 10794 true Chr01: 29471370-29482163 Phaseolus vulgaris
Phvul.001G115300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 29477164-29482163 Phaseolus vulgaris
Phvul.001G115300 5.0kb downstream 5.0kb downstream 10794 true Chr01: 29466370-29477163 Phaseolus vulgaris
Phvul.001G115300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 29466370-29471369 Phaseolus vulgaris
Phvul.001G115300 10.0kb upstream 10.0kb upstream 15794 true Chr01: 29471370-29487163 Phaseolus vulgaris
Phvul.001G115300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 29477164-29487163 Phaseolus vulgaris
Phvul.001G115300 10.0kb downstream 10.0kb downstream 15794 true Chr01: 29461370-29477163 Phaseolus vulgaris
Phvul.001G115300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 29461370-29471369 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306481 5265 Fabidae View MSA
124065104 5270 Rosid View MSA
123739815 5271 Pentapetalae View MSA
122788812 5272 Eudicot View MSA
122049914 5273 Angiosperm View MSA
121349551 5274 Embryophyte View MSA
123426469 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.10858 0.0 19.9874    
cufflinks 6.60633 0.0 18.7469    
cufflinks 3.8146 0.0 11.4566    
cufflinks 7.57458 0.0 21.3379    
cufflinks 6.28891 0.0 18.0347    
cufflinks 2.75233 0.0 8.59939   Low
cufflinks 11.1591 0.0 30.2456    
cufflinks 40.7398 0.0 105.743 High High
cufflinks 10.7342 0.0 29.2599    
cufflinks 10.9834 0.0 29.8123    
cufflinks 4.71425 0.0 13.9434    

0 Strain