Gene : Phvul.001G115600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR33284:SF1 - RIBOSOMAL L25/TL5/CTC N-TERMINAL 5S RRNA BINDING DOMAIN-CONTAINING PROTEIN Genomic Order:  1093
Name:  ? Phvul.001G115600 Secondary Identifier:  ? PAC:37170066
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G115600 0.5kb upstream 0.5kb upstream 3356 true Chr01: 29544676-29548031 Phaseolus vulgaris
Phvul.001G115600 0.5kb upstream 0.5kb upstream 500 false Chr01: 29544676-29545175 Phaseolus vulgaris
Phvul.001G115600 0.5kb downstream 0.5kb downstream 3356 true Chr01: 29545176-29548531 Phaseolus vulgaris
Phvul.001G115600 0.5kb downstream 0.5kb downstream 500 false Chr01: 29548032-29548531 Phaseolus vulgaris
Phvul.001G115600 1.0kb upstream 1.0kb upstream 3856 true Chr01: 29544176-29548031 Phaseolus vulgaris
Phvul.001G115600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 29544176-29545175 Phaseolus vulgaris
Phvul.001G115600 1.0kb downstream 1.0kb downstream 3856 true Chr01: 29545176-29549031 Phaseolus vulgaris
Phvul.001G115600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 29548032-29549031 Phaseolus vulgaris
Phvul.001G115600 2.0kb upstream 2.0kb upstream 4856 true Chr01: 29543176-29548031 Phaseolus vulgaris
Phvul.001G115600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 29543176-29545175 Phaseolus vulgaris
Phvul.001G115600 2.0kb downstream 2.0kb downstream 4856 true Chr01: 29545176-29550031 Phaseolus vulgaris
Phvul.001G115600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 29548032-29550031 Phaseolus vulgaris
Phvul.001G115600 5.0kb upstream 5.0kb upstream 7856 true Chr01: 29540176-29548031 Phaseolus vulgaris
Phvul.001G115600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 29540176-29545175 Phaseolus vulgaris
Phvul.001G115600 5.0kb downstream 5.0kb downstream 7856 true Chr01: 29545176-29553031 Phaseolus vulgaris
Phvul.001G115600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 29548032-29553031 Phaseolus vulgaris
Phvul.001G115600 10.0kb upstream 10.0kb upstream 12856 true Chr01: 29535176-29548031 Phaseolus vulgaris
Phvul.001G115600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 29535176-29545175 Phaseolus vulgaris
Phvul.001G115600 10.0kb downstream 10.0kb downstream 12856 true Chr01: 29545176-29558031 Phaseolus vulgaris
Phvul.001G115600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 29548032-29558031 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306243 5265 Fabidae View MSA
124062283 5270 Rosid View MSA
123743591 5271 Pentapetalae View MSA
122793831 5272 Eudicot View MSA
122044337 5273 Angiosperm View MSA
121344036 5274 Embryophyte View MSA
123426023 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.09238 0.0 34.4223    
cufflinks 17.6626 0.0 58.9659   High
cufflinks 8.13978 0.0 31.6655   Low
cufflinks 16.8419 0.0 56.1697   High
cufflinks 14.9627 0.0 51.0113    
cufflinks 8.05644 0.0 31.4068   Low
cufflinks 8.94496 0.0 33.7408    
cufflinks 12.2348 0.0 43.4802    
cufflinks 12.0279 0.0 42.8349    
cufflinks 13.1366 0.0 46.0368    
cufflinks 12.9509 0.0 45.3354    

0 Strain