Gene : Phvul.001G114400 P. vulgaris v2.1
Defline:  (1 of 2) K12591 - exosome complex exonuclease RRP6 (RRP6, EXOSC10) Genomic Order:  1137
Name:  ? Phvul.001G114400 Secondary Identifier:  ? PAC:37167889
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G114400 0.5kb upstream 0.5kb upstream 24763 true Chr01: 31076328-31101090 Phaseolus vulgaris
Phvul.001G114400 0.5kb upstream 0.5kb upstream 500 false Chr01: 31100591-31101090 Phaseolus vulgaris
Phvul.001G114400 0.5kb downstream 0.5kb downstream 24763 true Chr01: 31075828-31100590 Phaseolus vulgaris
Phvul.001G114400 0.5kb downstream 0.5kb downstream 500 false Chr01: 31075828-31076327 Phaseolus vulgaris
Phvul.001G114400 1.0kb upstream 1.0kb upstream 25263 true Chr01: 31076328-31101590 Phaseolus vulgaris
Phvul.001G114400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 31100591-31101590 Phaseolus vulgaris
Phvul.001G114400 1.0kb downstream 1.0kb downstream 25263 true Chr01: 31075328-31100590 Phaseolus vulgaris
Phvul.001G114400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 31075328-31076327 Phaseolus vulgaris
Phvul.001G114400 2.0kb upstream 2.0kb upstream 26263 true Chr01: 31076328-31102590 Phaseolus vulgaris
Phvul.001G114400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 31100591-31102590 Phaseolus vulgaris
Phvul.001G114400 2.0kb downstream 2.0kb downstream 26263 true Chr01: 31074328-31100590 Phaseolus vulgaris
Phvul.001G114400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 31074328-31076327 Phaseolus vulgaris
Phvul.001G114400 5.0kb upstream 5.0kb upstream 29263 true Chr01: 31076328-31105590 Phaseolus vulgaris
Phvul.001G114400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 31100591-31105590 Phaseolus vulgaris
Phvul.001G114400 5.0kb downstream 5.0kb downstream 29263 true Chr01: 31071328-31100590 Phaseolus vulgaris
Phvul.001G114400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 31071328-31076327 Phaseolus vulgaris
Phvul.001G114400 10.0kb upstream 10.0kb upstream 34263 true Chr01: 31076328-31110590 Phaseolus vulgaris
Phvul.001G114400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 31100591-31110590 Phaseolus vulgaris
Phvul.001G114400 10.0kb downstream 10.0kb downstream 34263 true Chr01: 31066328-31100590 Phaseolus vulgaris
Phvul.001G114400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 31066328-31076327 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121780131 5273 Angiosperm View MSA
122296824 5265 Fabidae View MSA
124039015 5270 Rosid View MSA
123745214 5271 Pentapetalae View MSA
122771410 5272 Eudicot View MSA
121051758 5274 Embryophyte View MSA
123091833 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.59034 0.0 4.83094   Low
cufflinks 2.52767 0.0 7.29738    
cufflinks 2.2283 0.0 6.50821    
cufflinks 1.43491 0.0 4.44802   Low
cufflinks 2.74122 0.0 7.89757    
cufflinks 3.33469 0.0 9.35911    
cufflinks 5.25016 0.0 14.1535   High
cufflinks 5.13448 0.0 13.8519   High
cufflinks 4.64955 0.0 12.6769   High
cufflinks 2.68369 0.0 7.71036    
cufflinks 3.10329 0.0 8.80773    

0 Strain