Gene : Phvul.001G119600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR23077:SF27 - SPERMATOGENESIS-ASSOCIATED PROTEIN 5 Genomic Order:  1129
Name:  ? Phvul.001G119600 Secondary Identifier:  ? PAC:37167956
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G119600 0.5kb upstream 0.5kb upstream 10255 true Chr01: 30760652-30770906 Phaseolus vulgaris
Phvul.001G119600 0.5kb upstream 0.5kb upstream 500 false Chr01: 30770407-30770906 Phaseolus vulgaris
Phvul.001G119600 0.5kb downstream 0.5kb downstream 10255 true Chr01: 30760152-30770406 Phaseolus vulgaris
Phvul.001G119600 0.5kb downstream 0.5kb downstream 500 false Chr01: 30760152-30760651 Phaseolus vulgaris
Phvul.001G119600 1.0kb upstream 1.0kb upstream 10755 true Chr01: 30760652-30771406 Phaseolus vulgaris
Phvul.001G119600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 30770407-30771406 Phaseolus vulgaris
Phvul.001G119600 1.0kb downstream 1.0kb downstream 10755 true Chr01: 30759652-30770406 Phaseolus vulgaris
Phvul.001G119600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 30759652-30760651 Phaseolus vulgaris
Phvul.001G119600 2.0kb upstream 2.0kb upstream 11755 true Chr01: 30760652-30772406 Phaseolus vulgaris
Phvul.001G119600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 30770407-30772406 Phaseolus vulgaris
Phvul.001G119600 2.0kb downstream 2.0kb downstream 11755 true Chr01: 30758652-30770406 Phaseolus vulgaris
Phvul.001G119600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 30758652-30760651 Phaseolus vulgaris
Phvul.001G119600 5.0kb upstream 5.0kb upstream 14755 true Chr01: 30760652-30775406 Phaseolus vulgaris
Phvul.001G119600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 30770407-30775406 Phaseolus vulgaris
Phvul.001G119600 5.0kb downstream 5.0kb downstream 14755 true Chr01: 30755652-30770406 Phaseolus vulgaris
Phvul.001G119600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 30755652-30760651 Phaseolus vulgaris
Phvul.001G119600 10.0kb upstream 10.0kb upstream 19755 true Chr01: 30760652-30780406 Phaseolus vulgaris
Phvul.001G119600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 30770407-30780406 Phaseolus vulgaris
Phvul.001G119600 10.0kb downstream 10.0kb downstream 19755 true Chr01: 30750652-30770406 Phaseolus vulgaris
Phvul.001G119600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 30750652-30760651 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303948 5265 Fabidae View MSA
124067886 5270 Rosid View MSA
123737682 5271 Pentapetalae View MSA
122793147 5272 Eudicot View MSA
122041889 5273 Angiosperm View MSA
121345411 5274 Embryophyte View MSA
123426108 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.782433 0.0 2.78944   Low
cufflinks 3.00525 0.0 9.83717    
cufflinks 3.24319 0.0 12.0958    
cufflinks 1.45643 0.0 4.63682   Low
cufflinks 3.42838 0.0 11.0402    
cufflinks 2.51944 0.0 8.52161    
cufflinks 3.06393 0.0 10.0854    
cufflinks 3.69326 0.0 13.4726    
cufflinks 2.75974 0.0 9.14296    
cufflinks 4.11105 0.0 12.7937   High
cufflinks 2.06197 0.0 8.78982    

0 Strain