Gene : Phvul.001G118800 P. vulgaris v2.1
Defline:  (1 of 1) PF06337//PF13423//PF14533 - DUSP domain (DUSP) // Ubiquitin carboxyl-terminal hydrolase (UCH_1) // Ubiquitin-specific protease C-terminal (USP7_C2) Genomic Order:  1121
Name:  ? Phvul.001G118800 Secondary Identifier:  ? PAC:37168694
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G118800 0.5kb upstream 0.5kb upstream 20593 true Chr01: 30518285-30538877 Phaseolus vulgaris
Phvul.001G118800 0.5kb upstream 0.5kb upstream 500 false Chr01: 30538378-30538877 Phaseolus vulgaris
Phvul.001G118800 0.5kb downstream 0.5kb downstream 20593 true Chr01: 30517785-30538377 Phaseolus vulgaris
Phvul.001G118800 0.5kb downstream 0.5kb downstream 500 false Chr01: 30517785-30518284 Phaseolus vulgaris
Phvul.001G118800 1.0kb upstream 1.0kb upstream 21093 true Chr01: 30518285-30539377 Phaseolus vulgaris
Phvul.001G118800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 30538378-30539377 Phaseolus vulgaris
Phvul.001G118800 1.0kb downstream 1.0kb downstream 21093 true Chr01: 30517285-30538377 Phaseolus vulgaris
Phvul.001G118800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 30517285-30518284 Phaseolus vulgaris
Phvul.001G118800 2.0kb upstream 2.0kb upstream 22093 true Chr01: 30518285-30540377 Phaseolus vulgaris
Phvul.001G118800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 30538378-30540377 Phaseolus vulgaris
Phvul.001G118800 2.0kb downstream 2.0kb downstream 22093 true Chr01: 30516285-30538377 Phaseolus vulgaris
Phvul.001G118800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 30516285-30518284 Phaseolus vulgaris
Phvul.001G118800 5.0kb upstream 5.0kb upstream 25093 true Chr01: 30518285-30543377 Phaseolus vulgaris
Phvul.001G118800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 30538378-30543377 Phaseolus vulgaris
Phvul.001G118800 5.0kb downstream 5.0kb downstream 25093 true Chr01: 30513285-30538377 Phaseolus vulgaris
Phvul.001G118800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 30513285-30518284 Phaseolus vulgaris
Phvul.001G118800 10.0kb upstream 10.0kb upstream 30093 true Chr01: 30518285-30548377 Phaseolus vulgaris
Phvul.001G118800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 30538378-30548377 Phaseolus vulgaris
Phvul.001G118800 10.0kb downstream 10.0kb downstream 30093 true Chr01: 30508285-30538377 Phaseolus vulgaris
Phvul.001G118800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 30508285-30518284 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302403 5265 Fabidae View MSA
124064988 5270 Rosid View MSA
123740108 5271 Pentapetalae View MSA
122790123 5272 Eudicot View MSA
122043938 5273 Angiosperm View MSA
121310212 5274 Embryophyte View MSA
123426305 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.01742 0.0 11.7616   Low
cufflinks 6.94991 0.0 20.2128    
cufflinks 6.41304 0.0 21.9221    
cufflinks 3.35577 0.0 13.0441   Low
cufflinks 5.06005 0.0 17.9532    
cufflinks 7.0153 0.0 20.2694    
cufflinks 6.38748 0.0 21.6885    
cufflinks 6.81328 0.0 22.6507    
cufflinks 6.61657 0.0 22.5776    
cufflinks 8.78203 0.0 28.6586   High
cufflinks 4.50865 0.0 16.4894    

0 Strain