Gene : Phvul.001G121000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10277//PTHR10277:SF38 - HOMOCITRATE SYNTHASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1178
Name:  ? Phvul.001G121000 Secondary Identifier:  ? PAC:37169997
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris LEU-DEG2-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G121000 0.5kb upstream 0.5kb upstream 9185 true Chr01: 33453845-33463029 Phaseolus vulgaris
Phvul.001G121000 0.5kb upstream 0.5kb upstream 500 false Chr01: 33462530-33463029 Phaseolus vulgaris
Phvul.001G121000 0.5kb downstream 0.5kb downstream 9185 true Chr01: 33453345-33462529 Phaseolus vulgaris
Phvul.001G121000 0.5kb downstream 0.5kb downstream 500 false Chr01: 33453345-33453844 Phaseolus vulgaris
Phvul.001G121000 1.0kb upstream 1.0kb upstream 9685 true Chr01: 33453845-33463529 Phaseolus vulgaris
Phvul.001G121000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 33462530-33463529 Phaseolus vulgaris
Phvul.001G121000 1.0kb downstream 1.0kb downstream 9685 true Chr01: 33452845-33462529 Phaseolus vulgaris
Phvul.001G121000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 33452845-33453844 Phaseolus vulgaris
Phvul.001G121000 2.0kb upstream 2.0kb upstream 10685 true Chr01: 33453845-33464529 Phaseolus vulgaris
Phvul.001G121000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 33462530-33464529 Phaseolus vulgaris
Phvul.001G121000 2.0kb downstream 2.0kb downstream 10685 true Chr01: 33451845-33462529 Phaseolus vulgaris
Phvul.001G121000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 33451845-33453844 Phaseolus vulgaris
Phvul.001G121000 5.0kb upstream 5.0kb upstream 13685 true Chr01: 33453845-33467529 Phaseolus vulgaris
Phvul.001G121000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 33462530-33467529 Phaseolus vulgaris
Phvul.001G121000 5.0kb downstream 5.0kb downstream 13685 true Chr01: 33448845-33462529 Phaseolus vulgaris
Phvul.001G121000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 33448845-33453844 Phaseolus vulgaris
Phvul.001G121000 10.0kb upstream 10.0kb upstream 18685 true Chr01: 33453845-33472529 Phaseolus vulgaris
Phvul.001G121000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 33462530-33472529 Phaseolus vulgaris
Phvul.001G121000 10.0kb downstream 10.0kb downstream 18685 true Chr01: 33443845-33462529 Phaseolus vulgaris
Phvul.001G121000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 33443845-33453844 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314208 5265 Fabidae View MSA
124074648 5270 Rosid View MSA
123743387 5271 Pentapetalae View MSA
122790168 5272 Eudicot View MSA
122045409 5273 Angiosperm View MSA
121347999 5274 Embryophyte View MSA
123426187 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.3203 0.0 58.6341   High
cufflinks 6.9825 0.0 23.497    
cufflinks 5.64032 0.0 19.7431    
cufflinks 6.23273 0.0 21.9322    
cufflinks 8.27027 0.0 31.6516    
cufflinks 3.22507 0.0 10.4324   Low
cufflinks 3.91635 0.0 15.618    
cufflinks 4.08702 0.0 16.0588    
cufflinks 6.89243 0.0 27.5465    
cufflinks 13.0252 0.0 45.6007   High
cufflinks 3.89083 0.0 12.3486    

0 Strain