Gene : Phvul.001G243300 P. vulgaris v2.1
Defline:  (1 of 6) K05857 - phosphatidylinositol phospholipase C, delta (PLCD) Genomic Order:  2413
Name:  ? Phvul.001G243300 Secondary Identifier:  ? PAC:37167935
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris LIPASYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-6351 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6367 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7039 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G243300 0.5kb upstream 0.5kb upstream 5805 true Chr01: 49557021-49562825 Phaseolus vulgaris
Phvul.001G243300 0.5kb upstream 0.5kb upstream 500 false Chr01: 49557021-49557520 Phaseolus vulgaris
Phvul.001G243300 0.5kb downstream 0.5kb downstream 5805 true Chr01: 49557521-49563325 Phaseolus vulgaris
Phvul.001G243300 0.5kb downstream 0.5kb downstream 500 false Chr01: 49562826-49563325 Phaseolus vulgaris
Phvul.001G243300 1.0kb upstream 1.0kb upstream 6305 true Chr01: 49556521-49562825 Phaseolus vulgaris
Phvul.001G243300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 49556521-49557520 Phaseolus vulgaris
Phvul.001G243300 1.0kb downstream 1.0kb downstream 6305 true Chr01: 49557521-49563825 Phaseolus vulgaris
Phvul.001G243300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 49562826-49563825 Phaseolus vulgaris
Phvul.001G243300 2.0kb upstream 2.0kb upstream 7305 true Chr01: 49555521-49562825 Phaseolus vulgaris
Phvul.001G243300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 49555521-49557520 Phaseolus vulgaris
Phvul.001G243300 2.0kb downstream 2.0kb downstream 7305 true Chr01: 49557521-49564825 Phaseolus vulgaris
Phvul.001G243300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 49562826-49564825 Phaseolus vulgaris
Phvul.001G243300 5.0kb upstream 5.0kb upstream 10305 true Chr01: 49552521-49562825 Phaseolus vulgaris
Phvul.001G243300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 49552521-49557520 Phaseolus vulgaris
Phvul.001G243300 5.0kb downstream 5.0kb downstream 10305 true Chr01: 49557521-49567825 Phaseolus vulgaris
Phvul.001G243300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 49562826-49567825 Phaseolus vulgaris
Phvul.001G243300 10.0kb upstream 10.0kb upstream 15305 true Chr01: 49547521-49562825 Phaseolus vulgaris
Phvul.001G243300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 49547521-49557520 Phaseolus vulgaris
Phvul.001G243300 10.0kb downstream 10.0kb downstream 15305 true Chr01: 49557521-49572825 Phaseolus vulgaris
Phvul.001G243300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 49562826-49572825 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311245 5265 Fabidae View MSA
124061623 5270 Rosid View MSA
123747750 5271 Pentapetalae View MSA
122786994 5272 Eudicot View MSA
122046719 5273 Angiosperm View MSA
121351735 5274 Embryophyte View MSA
123428200 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.9905 0.0 33.7264   High
cufflinks 8.55754 0.0 22.6934    
cufflinks 2.02328 0.0 6.12773    
cufflinks 1.98504 0.0 6.11551    
cufflinks 3.37059 0.0 9.74496    
cufflinks 2.15734 0.0 6.50955    
cufflinks 2.05179 0.0 6.22669    
cufflinks 1.04099 0.0 3.4021   Low
cufflinks 3.91299 0.0 11.0929    
cufflinks 18.6087 0.0 48.1005   High
cufflinks 4.38374 0.0 12.3292    

0 Strain