Gene : Phvul.001G246000 P. vulgaris v2.1
Defline:  (1 of 1) K14809 - ATP-dependent RNA helicase DDX55/SPB4 [EC:3.6.4.13] (DDX55, SPB4) Genomic Order:  2440
Name:  ? Phvul.001G246000 Secondary Identifier:  ? PAC:37169649
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G246000 0.5kb upstream 0.5kb upstream 5615 true Chr01: 49793823-49799437 Phaseolus vulgaris
Phvul.001G246000 0.5kb upstream 0.5kb upstream 500 false Chr01: 49798938-49799437 Phaseolus vulgaris
Phvul.001G246000 0.5kb downstream 0.5kb downstream 5615 true Chr01: 49793323-49798937 Phaseolus vulgaris
Phvul.001G246000 0.5kb downstream 0.5kb downstream 500 false Chr01: 49793323-49793822 Phaseolus vulgaris
Phvul.001G246000 1.0kb upstream 1.0kb upstream 6115 true Chr01: 49793823-49799937 Phaseolus vulgaris
Phvul.001G246000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 49798938-49799937 Phaseolus vulgaris
Phvul.001G246000 1.0kb downstream 1.0kb downstream 6115 true Chr01: 49792823-49798937 Phaseolus vulgaris
Phvul.001G246000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 49792823-49793822 Phaseolus vulgaris
Phvul.001G246000 2.0kb upstream 2.0kb upstream 7115 true Chr01: 49793823-49800937 Phaseolus vulgaris
Phvul.001G246000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 49798938-49800937 Phaseolus vulgaris
Phvul.001G246000 2.0kb downstream 2.0kb downstream 7115 true Chr01: 49791823-49798937 Phaseolus vulgaris
Phvul.001G246000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 49791823-49793822 Phaseolus vulgaris
Phvul.001G246000 5.0kb upstream 5.0kb upstream 10115 true Chr01: 49793823-49803937 Phaseolus vulgaris
Phvul.001G246000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 49798938-49803937 Phaseolus vulgaris
Phvul.001G246000 5.0kb downstream 5.0kb downstream 10115 true Chr01: 49788823-49798937 Phaseolus vulgaris
Phvul.001G246000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 49788823-49793822 Phaseolus vulgaris
Phvul.001G246000 10.0kb upstream 10.0kb upstream 15115 true Chr01: 49793823-49808937 Phaseolus vulgaris
Phvul.001G246000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 49798938-49808937 Phaseolus vulgaris
Phvul.001G246000 10.0kb downstream 10.0kb downstream 15115 true Chr01: 49783823-49798937 Phaseolus vulgaris
Phvul.001G246000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 49783823-49793822 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306552 5265 Fabidae View MSA
124068016 5270 Rosid View MSA
123739491 5271 Pentapetalae View MSA
122792074 5272 Eudicot View MSA
122042767 5273 Angiosperm View MSA
123429160 5275 Viridiplantae View MSA
121346858 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.04299 0.0 13.9957    
cufflinks 8.36527 0.0 22.2797    
cufflinks 8.37169 0.0 22.2715    
cufflinks 2.66052 0.0 7.92355   Low
cufflinks 5.52251 0.0 15.3026    
cufflinks 6.58197 0.0 17.8542    
cufflinks 7.03371 0.0 18.952    
cufflinks 8.20849 0.0 21.8202    
cufflinks 6.57919 0.0 17.8494    
cufflinks 11.0533 0.0 28.9411   High
cufflinks 5.75776 0.0 15.856    

0 Strain