Gene : Phvul.001G244500 P. vulgaris v2.1
Defline:  (1 of 3) PTHR12565//PTHR12565:SF181 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  2425
Name:  ? Phvul.001G244500 Secondary Identifier:  ? PAC:37168741
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G244500 0.5kb upstream 0.5kb upstream 2955 true Chr01: 49666136-49669090 Phaseolus vulgaris
Phvul.001G244500 0.5kb upstream 0.5kb upstream 500 false Chr01: 49666136-49666635 Phaseolus vulgaris
Phvul.001G244500 0.5kb downstream 0.5kb downstream 2955 true Chr01: 49666636-49669590 Phaseolus vulgaris
Phvul.001G244500 0.5kb downstream 0.5kb downstream 500 false Chr01: 49669091-49669590 Phaseolus vulgaris
Phvul.001G244500 1.0kb upstream 1.0kb upstream 3455 true Chr01: 49665636-49669090 Phaseolus vulgaris
Phvul.001G244500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 49665636-49666635 Phaseolus vulgaris
Phvul.001G244500 1.0kb downstream 1.0kb downstream 3455 true Chr01: 49666636-49670090 Phaseolus vulgaris
Phvul.001G244500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 49669091-49670090 Phaseolus vulgaris
Phvul.001G244500 2.0kb upstream 2.0kb upstream 4455 true Chr01: 49664636-49669090 Phaseolus vulgaris
Phvul.001G244500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 49664636-49666635 Phaseolus vulgaris
Phvul.001G244500 2.0kb downstream 2.0kb downstream 4455 true Chr01: 49666636-49671090 Phaseolus vulgaris
Phvul.001G244500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 49669091-49671090 Phaseolus vulgaris
Phvul.001G244500 5.0kb upstream 5.0kb upstream 7455 true Chr01: 49661636-49669090 Phaseolus vulgaris
Phvul.001G244500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 49661636-49666635 Phaseolus vulgaris
Phvul.001G244500 5.0kb downstream 5.0kb downstream 7455 true Chr01: 49666636-49674090 Phaseolus vulgaris
Phvul.001G244500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 49669091-49674090 Phaseolus vulgaris
Phvul.001G244500 10.0kb upstream 10.0kb upstream 12455 true Chr01: 49656636-49669090 Phaseolus vulgaris
Phvul.001G244500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 49656636-49666635 Phaseolus vulgaris
Phvul.001G244500 10.0kb downstream 10.0kb downstream 12455 true Chr01: 49666636-49679090 Phaseolus vulgaris
Phvul.001G244500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 49669091-49679090 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306982 5265 Fabidae View MSA
124063256 5270 Rosid View MSA
123736392 5271 Pentapetalae View MSA
122786016 5272 Eudicot View MSA
122048947 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.0647 0.0 59.9614    
cufflinks 11.0934 0.0 34.5014    
cufflinks 3.70152 0.0 11.7079    
cufflinks 5.42235 0.0 19.5282    
cufflinks 23.7116 0.0 67.2213   High
cufflinks 3.45932 0.0 14.0433    
cufflinks 4.0696 0.0 15.4336    
cufflinks 2.39307 0.0 10.595   Low
cufflinks 1.38177 0.0 5.6081   Low
cufflinks 16.6777 0.0 48.7835    
cufflinks 25.6489 0.0 82.5183   High

0 Strain