Gene : Phvul.001G248300 P. vulgaris v2.1
Defline:  (1 of 12) K10523 - speckle-type POZ protein (SPOP) Genomic Order:  2463
Name:  ? Phvul.001G248300 Secondary Identifier:  ? PAC:37171269
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G248300 0.5kb upstream 0.5kb upstream 2014 true Chr01: 49947815-49949828 Phaseolus vulgaris
Phvul.001G248300 0.5kb upstream 0.5kb upstream 500 false Chr01: 49949329-49949828 Phaseolus vulgaris
Phvul.001G248300 0.5kb downstream 0.5kb downstream 2014 true Chr01: 49947315-49949328 Phaseolus vulgaris
Phvul.001G248300 0.5kb downstream 0.5kb downstream 500 false Chr01: 49947315-49947814 Phaseolus vulgaris
Phvul.001G248300 1.0kb upstream 1.0kb upstream 2514 true Chr01: 49947815-49950328 Phaseolus vulgaris
Phvul.001G248300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 49949329-49950328 Phaseolus vulgaris
Phvul.001G248300 1.0kb downstream 1.0kb downstream 2514 true Chr01: 49946815-49949328 Phaseolus vulgaris
Phvul.001G248300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 49946815-49947814 Phaseolus vulgaris
Phvul.001G248300 2.0kb upstream 2.0kb upstream 3514 true Chr01: 49947815-49951328 Phaseolus vulgaris
Phvul.001G248300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 49949329-49951328 Phaseolus vulgaris
Phvul.001G248300 2.0kb downstream 2.0kb downstream 3514 true Chr01: 49945815-49949328 Phaseolus vulgaris
Phvul.001G248300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 49945815-49947814 Phaseolus vulgaris
Phvul.001G248300 5.0kb upstream 5.0kb upstream 6514 true Chr01: 49947815-49954328 Phaseolus vulgaris
Phvul.001G248300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 49949329-49954328 Phaseolus vulgaris
Phvul.001G248300 5.0kb downstream 5.0kb downstream 6514 true Chr01: 49942815-49949328 Phaseolus vulgaris
Phvul.001G248300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 49942815-49947814 Phaseolus vulgaris
Phvul.001G248300 10.0kb upstream 10.0kb upstream 11514 true Chr01: 49947815-49959328 Phaseolus vulgaris
Phvul.001G248300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 49949329-49959328 Phaseolus vulgaris
Phvul.001G248300 10.0kb downstream 10.0kb downstream 11514 true Chr01: 49937815-49949328 Phaseolus vulgaris
Phvul.001G248300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 49937815-49947814 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315078 5265 Fabidae View MSA
124074113 5270 Rosid View MSA
123752878 5271 Pentapetalae View MSA
122786642 5272 Eudicot View MSA
122047536 5273 Angiosperm View MSA
123429159 5275 Viridiplantae View MSA
121351417 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.0369 0.0 36.4453    
cufflinks 0.351947 0.0 2.65095 Low Low
cufflinks 0.371167 0.0 1.45567 Low Low
cufflinks 34.8504 0.0 111.606 High High
cufflinks 6.99626 0.0 25.8222    
cufflinks 2.0404 0.0 10.5864    
cufflinks 9.00124 0.0 33.3791    
cufflinks 3.29618 0.0 14.3256    
cufflinks 23.0411 0.0 69.7329   High
cufflinks 0.923013 0.0 5.67504    
cufflinks 13.1699 0.0 42.0645    

0 Strain