Gene : Phvul.001G231600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR23315:SF65 - ARM REPEAT SUPERFAMILY PROTEIN Genomic Order:  2297
Name:  ? Phvul.001G231600 Secondary Identifier:  ? PAC:37169359
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7511 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G231600 0.5kb upstream 0.5kb upstream 4584 true Chr01: 48557237-48561820 Phaseolus vulgaris
Phvul.001G231600 0.5kb upstream 0.5kb upstream 500 false Chr01: 48557237-48557736 Phaseolus vulgaris
Phvul.001G231600 0.5kb downstream 0.5kb downstream 4584 true Chr01: 48557737-48562320 Phaseolus vulgaris
Phvul.001G231600 0.5kb downstream 0.5kb downstream 500 false Chr01: 48561821-48562320 Phaseolus vulgaris
Phvul.001G231600 1.0kb upstream 1.0kb upstream 5084 true Chr01: 48556737-48561820 Phaseolus vulgaris
Phvul.001G231600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 48556737-48557736 Phaseolus vulgaris
Phvul.001G231600 1.0kb downstream 1.0kb downstream 5084 true Chr01: 48557737-48562820 Phaseolus vulgaris
Phvul.001G231600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 48561821-48562820 Phaseolus vulgaris
Phvul.001G231600 2.0kb upstream 2.0kb upstream 6084 true Chr01: 48555737-48561820 Phaseolus vulgaris
Phvul.001G231600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 48555737-48557736 Phaseolus vulgaris
Phvul.001G231600 2.0kb downstream 2.0kb downstream 6084 true Chr01: 48557737-48563820 Phaseolus vulgaris
Phvul.001G231600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 48561821-48563820 Phaseolus vulgaris
Phvul.001G231600 5.0kb upstream 5.0kb upstream 9084 true Chr01: 48552737-48561820 Phaseolus vulgaris
Phvul.001G231600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 48552737-48557736 Phaseolus vulgaris
Phvul.001G231600 5.0kb downstream 5.0kb downstream 9084 true Chr01: 48557737-48566820 Phaseolus vulgaris
Phvul.001G231600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 48561821-48566820 Phaseolus vulgaris
Phvul.001G231600 10.0kb upstream 10.0kb upstream 14084 true Chr01: 48547737-48561820 Phaseolus vulgaris
Phvul.001G231600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 48547737-48557736 Phaseolus vulgaris
Phvul.001G231600 10.0kb downstream 10.0kb downstream 14084 true Chr01: 48557737-48571820 Phaseolus vulgaris
Phvul.001G231600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 48561821-48571820 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306926 5265 Fabidae View MSA
124062792 5270 Rosid View MSA
123747212 5271 Pentapetalae View MSA
122790234 5272 Eudicot View MSA
122044762 5273 Angiosperm View MSA
121310337 5274 Embryophyte View MSA
123347849 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.4517 0.0 99.6708 High High
cufflinks 17.1298 0.0 44.9685    
cufflinks 15.2225 0.0 40.179    
cufflinks 24.9807 0.0 64.6375    
cufflinks 14.0731 0.0 37.3565    
cufflinks 12.9997 0.0 34.7243    
cufflinks 6.45609 0.0 18.2926   Low
cufflinks 10.9226 0.0 29.5611    
cufflinks 5.30061 0.0 15.3545   Low
cufflinks 22.669 0.0 58.8266    
cufflinks 15.7134 0.0 41.4639    

0 Strain