Gene : Phvul.001G233700 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22763//PTHR22763:SF26 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  2318
Name:  ? Phvul.001G233700 Secondary Identifier:  ? PAC:37170651
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7511 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G233700 0.5kb upstream 0.5kb upstream 2464 true Chr01: 48782966-48785429 Phaseolus vulgaris
Phvul.001G233700 0.5kb upstream 0.5kb upstream 500 false Chr01: 48784930-48785429 Phaseolus vulgaris
Phvul.001G233700 0.5kb downstream 0.5kb downstream 2464 true Chr01: 48782466-48784929 Phaseolus vulgaris
Phvul.001G233700 0.5kb downstream 0.5kb downstream 500 false Chr01: 48782466-48782965 Phaseolus vulgaris
Phvul.001G233700 1.0kb upstream 1.0kb upstream 2964 true Chr01: 48782966-48785929 Phaseolus vulgaris
Phvul.001G233700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 48784930-48785929 Phaseolus vulgaris
Phvul.001G233700 1.0kb downstream 1.0kb downstream 2964 true Chr01: 48781966-48784929 Phaseolus vulgaris
Phvul.001G233700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 48781966-48782965 Phaseolus vulgaris
Phvul.001G233700 2.0kb upstream 2.0kb upstream 3964 true Chr01: 48782966-48786929 Phaseolus vulgaris
Phvul.001G233700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 48784930-48786929 Phaseolus vulgaris
Phvul.001G233700 2.0kb downstream 2.0kb downstream 3964 true Chr01: 48780966-48784929 Phaseolus vulgaris
Phvul.001G233700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 48780966-48782965 Phaseolus vulgaris
Phvul.001G233700 5.0kb upstream 5.0kb upstream 6964 true Chr01: 48782966-48789929 Phaseolus vulgaris
Phvul.001G233700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 48784930-48789929 Phaseolus vulgaris
Phvul.001G233700 5.0kb downstream 5.0kb downstream 6964 true Chr01: 48777966-48784929 Phaseolus vulgaris
Phvul.001G233700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 48777966-48782965 Phaseolus vulgaris
Phvul.001G233700 10.0kb upstream 10.0kb upstream 11964 true Chr01: 48782966-48794929 Phaseolus vulgaris
Phvul.001G233700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 48784930-48794929 Phaseolus vulgaris
Phvul.001G233700 10.0kb downstream 10.0kb downstream 11964 true Chr01: 48772966-48784929 Phaseolus vulgaris
Phvul.001G233700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 48772966-48782965 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304195 5265 Fabidae View MSA
124073026 5270 Rosid View MSA
123745848 5271 Pentapetalae View MSA
122795555 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.8017 0.0 72.2041    
cufflinks 27.2273 0.0 70.5973    
cufflinks 20.6289 0.0 53.3229   Low
cufflinks 34.0566 0.0 89.0115    
cufflinks 38.0632 0.0 100.405 High  
cufflinks 25.0289 0.0 64.7835    
cufflinks 26.1839 0.0 67.9301    
cufflinks 23.914 0.0 61.8844    
cufflinks 24.205 0.0 62.6426    
cufflinks 57.5118 0.0 156.112 High High
cufflinks 39.3949 0.0 103.992 High  

0 Strain