Gene : Phvul.001G236400 P. vulgaris v2.1
Defline:  (1 of 12) K10523 - speckle-type POZ protein (SPOP) Genomic Order:  2344
Name:  ? Phvul.001G236400 Secondary Identifier:  ? PAC:37169497
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G236400 0.5kb upstream 0.5kb upstream 7591 true Chr01: 48960040-48967630 Phaseolus vulgaris
Phvul.001G236400 0.5kb upstream 0.5kb upstream 500 false Chr01: 48960040-48960539 Phaseolus vulgaris
Phvul.001G236400 0.5kb downstream 0.5kb downstream 7591 true Chr01: 48960540-48968130 Phaseolus vulgaris
Phvul.001G236400 0.5kb downstream 0.5kb downstream 500 false Chr01: 48967631-48968130 Phaseolus vulgaris
Phvul.001G236400 1.0kb upstream 1.0kb upstream 8091 true Chr01: 48959540-48967630 Phaseolus vulgaris
Phvul.001G236400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 48959540-48960539 Phaseolus vulgaris
Phvul.001G236400 1.0kb downstream 1.0kb downstream 8091 true Chr01: 48960540-48968630 Phaseolus vulgaris
Phvul.001G236400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 48967631-48968630 Phaseolus vulgaris
Phvul.001G236400 2.0kb upstream 2.0kb upstream 9091 true Chr01: 48958540-48967630 Phaseolus vulgaris
Phvul.001G236400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 48958540-48960539 Phaseolus vulgaris
Phvul.001G236400 2.0kb downstream 2.0kb downstream 9091 true Chr01: 48960540-48969630 Phaseolus vulgaris
Phvul.001G236400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 48967631-48969630 Phaseolus vulgaris
Phvul.001G236400 5.0kb upstream 5.0kb upstream 12091 true Chr01: 48955540-48967630 Phaseolus vulgaris
Phvul.001G236400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 48955540-48960539 Phaseolus vulgaris
Phvul.001G236400 5.0kb downstream 5.0kb downstream 12091 true Chr01: 48960540-48972630 Phaseolus vulgaris
Phvul.001G236400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 48967631-48972630 Phaseolus vulgaris
Phvul.001G236400 10.0kb upstream 10.0kb upstream 17091 true Chr01: 48950540-48967630 Phaseolus vulgaris
Phvul.001G236400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 48950540-48960539 Phaseolus vulgaris
Phvul.001G236400 10.0kb downstream 10.0kb downstream 17091 true Chr01: 48960540-48977630 Phaseolus vulgaris
Phvul.001G236400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 48967631-48977630 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302380 5265 Fabidae View MSA
124067475 5270 Rosid View MSA
123739002 5271 Pentapetalae View MSA
122796766 5272 Eudicot View MSA
122042496 5273 Angiosperm View MSA
121309979 5274 Embryophyte View MSA
123428082 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.7816 0.0 172.594 High High
cufflinks 34.2055 0.0 123.018 High  
cufflinks 20.4035 0.0 72.7515   Low
cufflinks 30.1649 0.0 107.014    
cufflinks 26.9187 0.0 95.8734    
cufflinks 23.7328 0.0 84.3154   Low
cufflinks 29.8377 0.0 106.18 High  
cufflinks 34.7674 0.0 124.613 High  
cufflinks 27.5591 0.0 97.8532    
cufflinks 43.6022 0.0 159.201 High High
cufflinks 33.4919 0.0 119.571    

0 Strain