Gene : Phvul.001G238500 P. vulgaris v2.1
Defline:  (1 of 2) PTHR33101:SF4 - ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5-RELATED Genomic Order:  2365
Name:  ? Phvul.001G238500 Secondary Identifier:  ? PAC:37168857
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G238500 0.5kb upstream 0.5kb upstream 4064 true Chr01: 49168080-49172143 Phaseolus vulgaris
Phvul.001G238500 0.5kb upstream 0.5kb upstream 500 false Chr01: 49171644-49172143 Phaseolus vulgaris
Phvul.001G238500 0.5kb downstream 0.5kb downstream 4064 true Chr01: 49167580-49171643 Phaseolus vulgaris
Phvul.001G238500 0.5kb downstream 0.5kb downstream 500 false Chr01: 49167580-49168079 Phaseolus vulgaris
Phvul.001G238500 1.0kb upstream 1.0kb upstream 4564 true Chr01: 49168080-49172643 Phaseolus vulgaris
Phvul.001G238500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 49171644-49172643 Phaseolus vulgaris
Phvul.001G238500 1.0kb downstream 1.0kb downstream 4564 true Chr01: 49167080-49171643 Phaseolus vulgaris
Phvul.001G238500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 49167080-49168079 Phaseolus vulgaris
Phvul.001G238500 2.0kb upstream 2.0kb upstream 5564 true Chr01: 49168080-49173643 Phaseolus vulgaris
Phvul.001G238500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 49171644-49173643 Phaseolus vulgaris
Phvul.001G238500 2.0kb downstream 2.0kb downstream 5564 true Chr01: 49166080-49171643 Phaseolus vulgaris
Phvul.001G238500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 49166080-49168079 Phaseolus vulgaris
Phvul.001G238500 5.0kb upstream 5.0kb upstream 8564 true Chr01: 49168080-49176643 Phaseolus vulgaris
Phvul.001G238500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 49171644-49176643 Phaseolus vulgaris
Phvul.001G238500 5.0kb downstream 5.0kb downstream 8564 true Chr01: 49163080-49171643 Phaseolus vulgaris
Phvul.001G238500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 49163080-49168079 Phaseolus vulgaris
Phvul.001G238500 10.0kb upstream 10.0kb upstream 13564 true Chr01: 49168080-49181643 Phaseolus vulgaris
Phvul.001G238500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 49171644-49181643 Phaseolus vulgaris
Phvul.001G238500 10.0kb downstream 10.0kb downstream 13564 true Chr01: 49158080-49171643 Phaseolus vulgaris
Phvul.001G238500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 49158080-49168079 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303061 5265 Fabidae View MSA
124075143 5270 Rosid View MSA
123746088 5271 Pentapetalae View MSA
122792106 5272 Eudicot View MSA
122045104 5273 Angiosperm View MSA
121349126 5274 Embryophyte View MSA
123381182 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.79931 0.0 5.59503    
cufflinks 4.5209 0.0 12.6931    
cufflinks 6.78796 0.0 18.3362    
cufflinks 1.38469 0.0 4.44919    
cufflinks 2.52029 0.0 7.55513    
cufflinks 7.94485 0.0 21.2499   High
cufflinks 3.79719 0.0 10.837    
cufflinks 2.52821 0.0 7.52157    
cufflinks 4.42717 0.0 12.4591    
cufflinks 0.136989 0.0 0.546046 Low Low
cufflinks 2.876 0.0 8.49209    

0 Strain