Gene : Phvul.001G224900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11850//PTHR11850:SF102 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED Genomic Order:  2231
Name:  ? Phvul.001G224900 Secondary Identifier:  ? PAC:37169440
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G224900 0.5kb upstream 0.5kb upstream 6372 true Chr01: 47969968-47976339 Phaseolus vulgaris
Phvul.001G224900 0.5kb upstream 0.5kb upstream 500 false Chr01: 47969968-47970467 Phaseolus vulgaris
Phvul.001G224900 0.5kb downstream 0.5kb downstream 6372 true Chr01: 47970468-47976839 Phaseolus vulgaris
Phvul.001G224900 0.5kb downstream 0.5kb downstream 500 false Chr01: 47976340-47976839 Phaseolus vulgaris
Phvul.001G224900 1.0kb upstream 1.0kb upstream 6872 true Chr01: 47969468-47976339 Phaseolus vulgaris
Phvul.001G224900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 47969468-47970467 Phaseolus vulgaris
Phvul.001G224900 1.0kb downstream 1.0kb downstream 6872 true Chr01: 47970468-47977339 Phaseolus vulgaris
Phvul.001G224900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 47976340-47977339 Phaseolus vulgaris
Phvul.001G224900 2.0kb upstream 2.0kb upstream 7872 true Chr01: 47968468-47976339 Phaseolus vulgaris
Phvul.001G224900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 47968468-47970467 Phaseolus vulgaris
Phvul.001G224900 2.0kb downstream 2.0kb downstream 7872 true Chr01: 47970468-47978339 Phaseolus vulgaris
Phvul.001G224900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 47976340-47978339 Phaseolus vulgaris
Phvul.001G224900 5.0kb upstream 5.0kb upstream 10872 true Chr01: 47965468-47976339 Phaseolus vulgaris
Phvul.001G224900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 47965468-47970467 Phaseolus vulgaris
Phvul.001G224900 5.0kb downstream 5.0kb downstream 10872 true Chr01: 47970468-47981339 Phaseolus vulgaris
Phvul.001G224900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 47976340-47981339 Phaseolus vulgaris
Phvul.001G224900 10.0kb upstream 10.0kb upstream 15872 true Chr01: 47960468-47976339 Phaseolus vulgaris
Phvul.001G224900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 47960468-47970467 Phaseolus vulgaris
Phvul.001G224900 10.0kb downstream 10.0kb downstream 15872 true Chr01: 47970468-47986339 Phaseolus vulgaris
Phvul.001G224900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 47976340-47986339 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122253961 5265 Fabidae View MSA
124071044 5270 Rosid View MSA
123750536 5271 Pentapetalae View MSA
122794934 5272 Eudicot View MSA
122051072 5273 Angiosperm View MSA
121351483 5274 Embryophyte View MSA
123428758 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.1221 0.0 50.1581    
cufflinks 12.7661 0.0 34.4779    
cufflinks 0.719948 0.0 2.62622   Low
cufflinks 13.3636 0.0 36.0339    
cufflinks 14.2021 0.0 38.149    
cufflinks 1.78165 0.0 5.91089   Low
cufflinks 3.91384 0.0 11.8303    
cufflinks 2.4718 0.0 7.86499    
cufflinks 2.88836 0.0 9.06279    
cufflinks 12.8641 0.0 34.7344    
cufflinks 28.1897 0.0 73.0066   High

0 Strain