Gene : Phvul.001G229000 P. vulgaris v2.1
Defline:  (1 of 1) K03934 - NADH dehydrogenase (ubiquinone) Fe-S protein 1 (NDUFS1) Genomic Order:  2271
Name:  ? Phvul.001G229000 Secondary Identifier:  ? PAC:37167681
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-3781 Phaseolus vulgaris pathologic  
Pvulgaris PWY-4302 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5083 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G229000 0.5kb upstream 0.5kb upstream 6865 true Chr01: 48299273-48306137 Phaseolus vulgaris
Phvul.001G229000 0.5kb upstream 0.5kb upstream 500 false Chr01: 48299273-48299772 Phaseolus vulgaris
Phvul.001G229000 0.5kb downstream 0.5kb downstream 6865 true Chr01: 48299773-48306637 Phaseolus vulgaris
Phvul.001G229000 0.5kb downstream 0.5kb downstream 500 false Chr01: 48306138-48306637 Phaseolus vulgaris
Phvul.001G229000 1.0kb upstream 1.0kb upstream 7365 true Chr01: 48298773-48306137 Phaseolus vulgaris
Phvul.001G229000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 48298773-48299772 Phaseolus vulgaris
Phvul.001G229000 1.0kb downstream 1.0kb downstream 7365 true Chr01: 48299773-48307137 Phaseolus vulgaris
Phvul.001G229000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 48306138-48307137 Phaseolus vulgaris
Phvul.001G229000 2.0kb upstream 2.0kb upstream 8365 true Chr01: 48297773-48306137 Phaseolus vulgaris
Phvul.001G229000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 48297773-48299772 Phaseolus vulgaris
Phvul.001G229000 2.0kb downstream 2.0kb downstream 8365 true Chr01: 48299773-48308137 Phaseolus vulgaris
Phvul.001G229000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 48306138-48308137 Phaseolus vulgaris
Phvul.001G229000 5.0kb upstream 5.0kb upstream 11365 true Chr01: 48294773-48306137 Phaseolus vulgaris
Phvul.001G229000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 48294773-48299772 Phaseolus vulgaris
Phvul.001G229000 5.0kb downstream 5.0kb downstream 11365 true Chr01: 48299773-48311137 Phaseolus vulgaris
Phvul.001G229000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 48306138-48311137 Phaseolus vulgaris
Phvul.001G229000 10.0kb upstream 10.0kb upstream 16365 true Chr01: 48289773-48306137 Phaseolus vulgaris
Phvul.001G229000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 48289773-48299772 Phaseolus vulgaris
Phvul.001G229000 10.0kb downstream 10.0kb downstream 16365 true Chr01: 48299773-48316137 Phaseolus vulgaris
Phvul.001G229000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 48306138-48316137 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302283 5265 Fabidae View MSA
124062856 5270 Rosid View MSA
123737847 5271 Pentapetalae View MSA
122786481 5272 Eudicot View MSA
122044121 5273 Angiosperm View MSA
121350903 5274 Embryophyte View MSA
123424434 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.5953 0.0 104.302 High Low
cufflinks 57.338 0.0 160.669 High  
cufflinks 43.1698 0.0 117.552 High Low
cufflinks 74.9752 0.0 216.749 High High
cufflinks 55.4241 0.0 155.014 High  
cufflinks 58.8541 0.0 165.368 High  
cufflinks 49.7739 0.0 137.86 High  
cufflinks 56.6817 0.0 158.995 High  
cufflinks 68.9242 0.0 197.639 High High
cufflinks 58.3773 0.0 164.027 High  
cufflinks 66.9857 0.0 191.235 High  

0 Strain