Gene : Phvul.001G218100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR13495 - NEFA-INTERACTING NUCLEAR PROTEIN NIP30 Genomic Order:  2164
Name:  ? Phvul.001G218100 Secondary Identifier:  ? PAC:37170581
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G218100 0.5kb upstream 0.5kb upstream 3126 true Chr01: 47373064-47376189 Phaseolus vulgaris
Phvul.001G218100 0.5kb upstream 0.5kb upstream 500 false Chr01: 47375690-47376189 Phaseolus vulgaris
Phvul.001G218100 0.5kb downstream 0.5kb downstream 3126 true Chr01: 47372564-47375689 Phaseolus vulgaris
Phvul.001G218100 0.5kb downstream 0.5kb downstream 500 false Chr01: 47372564-47373063 Phaseolus vulgaris
Phvul.001G218100 1.0kb upstream 1.0kb upstream 3626 true Chr01: 47373064-47376689 Phaseolus vulgaris
Phvul.001G218100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 47375690-47376689 Phaseolus vulgaris
Phvul.001G218100 1.0kb downstream 1.0kb downstream 3626 true Chr01: 47372064-47375689 Phaseolus vulgaris
Phvul.001G218100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 47372064-47373063 Phaseolus vulgaris
Phvul.001G218100 2.0kb upstream 2.0kb upstream 4626 true Chr01: 47373064-47377689 Phaseolus vulgaris
Phvul.001G218100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 47375690-47377689 Phaseolus vulgaris
Phvul.001G218100 2.0kb downstream 2.0kb downstream 4626 true Chr01: 47371064-47375689 Phaseolus vulgaris
Phvul.001G218100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 47371064-47373063 Phaseolus vulgaris
Phvul.001G218100 5.0kb upstream 5.0kb upstream 7626 true Chr01: 47373064-47380689 Phaseolus vulgaris
Phvul.001G218100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 47375690-47380689 Phaseolus vulgaris
Phvul.001G218100 5.0kb downstream 5.0kb downstream 7626 true Chr01: 47368064-47375689 Phaseolus vulgaris
Phvul.001G218100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 47368064-47373063 Phaseolus vulgaris
Phvul.001G218100 10.0kb upstream 10.0kb upstream 12626 true Chr01: 47373064-47385689 Phaseolus vulgaris
Phvul.001G218100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 47375690-47385689 Phaseolus vulgaris
Phvul.001G218100 10.0kb downstream 10.0kb downstream 12626 true Chr01: 47363064-47375689 Phaseolus vulgaris
Phvul.001G218100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 47363064-47373063 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300170 5265 Fabidae View MSA
124063271 5270 Rosid View MSA
123737480 5271 Pentapetalae View MSA
122787094 5272 Eudicot View MSA
122047119 5273 Angiosperm View MSA
121346332 5274 Embryophyte View MSA
123425229 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.7445 0.0 30.0806   High
cufflinks 9.95149 0.0 28.0132   High
cufflinks 6.28076 0.0 18.5108    
cufflinks 8.65758 0.0 24.8652    
cufflinks 4.17073 0.0 13.0626   Low
cufflinks 7.04265 0.0 20.4824    
cufflinks 5.6083 0.0 16.672    
cufflinks 7.61496 0.0 21.8171    
cufflinks 4.53331 0.0 13.8127   Low
cufflinks 4.92933 0.0 15.018    
cufflinks 7.11154 0.0 20.8215    

0 Strain