Gene : Phvul.001G220100 P. vulgaris v2.1
Defline:  (1 of 1) 3.4.22.1 - Cathepsin B / Cathepsin B1 Genomic Order:  2184
Name:  ? Phvul.001G220100 Secondary Identifier:  ? PAC:37169843
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G220100 0.5kb upstream 0.5kb upstream 8510 true Chr01: 47560878-47569387 Phaseolus vulgaris
Phvul.001G220100 0.5kb upstream 0.5kb upstream 500 false Chr01: 47568888-47569387 Phaseolus vulgaris
Phvul.001G220100 0.5kb downstream 0.5kb downstream 8510 true Chr01: 47560378-47568887 Phaseolus vulgaris
Phvul.001G220100 0.5kb downstream 0.5kb downstream 500 false Chr01: 47560378-47560877 Phaseolus vulgaris
Phvul.001G220100 1.0kb upstream 1.0kb upstream 9010 true Chr01: 47560878-47569887 Phaseolus vulgaris
Phvul.001G220100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 47568888-47569887 Phaseolus vulgaris
Phvul.001G220100 1.0kb downstream 1.0kb downstream 9010 true Chr01: 47559878-47568887 Phaseolus vulgaris
Phvul.001G220100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 47559878-47560877 Phaseolus vulgaris
Phvul.001G220100 2.0kb upstream 2.0kb upstream 10010 true Chr01: 47560878-47570887 Phaseolus vulgaris
Phvul.001G220100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 47568888-47570887 Phaseolus vulgaris
Phvul.001G220100 2.0kb downstream 2.0kb downstream 10010 true Chr01: 47558878-47568887 Phaseolus vulgaris
Phvul.001G220100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 47558878-47560877 Phaseolus vulgaris
Phvul.001G220100 5.0kb upstream 5.0kb upstream 13010 true Chr01: 47560878-47573887 Phaseolus vulgaris
Phvul.001G220100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 47568888-47573887 Phaseolus vulgaris
Phvul.001G220100 5.0kb downstream 5.0kb downstream 13010 true Chr01: 47555878-47568887 Phaseolus vulgaris
Phvul.001G220100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 47555878-47560877 Phaseolus vulgaris
Phvul.001G220100 10.0kb upstream 10.0kb upstream 18010 true Chr01: 47560878-47578887 Phaseolus vulgaris
Phvul.001G220100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 47568888-47578887 Phaseolus vulgaris
Phvul.001G220100 10.0kb downstream 10.0kb downstream 18010 true Chr01: 47550878-47568887 Phaseolus vulgaris
Phvul.001G220100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 47550878-47560877 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308797 5265 Fabidae View MSA
124067927 5270 Rosid View MSA
123736413 5271 Pentapetalae View MSA
122793546 5272 Eudicot View MSA
122041719 5273 Angiosperm View MSA
121345003 5274 Embryophyte View MSA
123427014 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1533.2 0.0 7579.34 High High
cufflinks 127.808 0.0 362.948 High  
cufflinks 73.7392 0.0 198.103 High  
cufflinks 190.819 0.0 571.069 High  
cufflinks 134.972 0.0 383.825 High  
cufflinks 64.8243 0.0 172.47 High Low
cufflinks 132.481 0.0 380.068 High  
cufflinks 85.1429 0.0 232.94 High  
cufflinks 120.801 0.0 341.278 High  
cufflinks 277.299 0.0 881.502 High  
cufflinks 146.563 0.0 421.831 High  

0 Strain