Gene : Phvul.001G212500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11361:SF89 - DNA MISMATCH REPAIR PROTEIN MSH6 Genomic Order:  2107
Name:  ? Phvul.001G212500 Secondary Identifier:  ? PAC:37168124
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G212500 0.5kb upstream 0.5kb upstream 9444 true Chr01: 46877302-46886745 Phaseolus vulgaris
Phvul.001G212500 0.5kb upstream 0.5kb upstream 500 false Chr01: 46886246-46886745 Phaseolus vulgaris
Phvul.001G212500 0.5kb downstream 0.5kb downstream 9444 true Chr01: 46876802-46886245 Phaseolus vulgaris
Phvul.001G212500 0.5kb downstream 0.5kb downstream 500 false Chr01: 46876802-46877301 Phaseolus vulgaris
Phvul.001G212500 1.0kb upstream 1.0kb upstream 9944 true Chr01: 46877302-46887245 Phaseolus vulgaris
Phvul.001G212500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 46886246-46887245 Phaseolus vulgaris
Phvul.001G212500 1.0kb downstream 1.0kb downstream 9944 true Chr01: 46876302-46886245 Phaseolus vulgaris
Phvul.001G212500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 46876302-46877301 Phaseolus vulgaris
Phvul.001G212500 2.0kb upstream 2.0kb upstream 10944 true Chr01: 46877302-46888245 Phaseolus vulgaris
Phvul.001G212500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 46886246-46888245 Phaseolus vulgaris
Phvul.001G212500 2.0kb downstream 2.0kb downstream 10944 true Chr01: 46875302-46886245 Phaseolus vulgaris
Phvul.001G212500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 46875302-46877301 Phaseolus vulgaris
Phvul.001G212500 5.0kb upstream 5.0kb upstream 13944 true Chr01: 46877302-46891245 Phaseolus vulgaris
Phvul.001G212500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 46886246-46891245 Phaseolus vulgaris
Phvul.001G212500 5.0kb downstream 5.0kb downstream 13944 true Chr01: 46872302-46886245 Phaseolus vulgaris
Phvul.001G212500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 46872302-46877301 Phaseolus vulgaris
Phvul.001G212500 10.0kb upstream 10.0kb upstream 18944 true Chr01: 46877302-46896245 Phaseolus vulgaris
Phvul.001G212500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 46886246-46896245 Phaseolus vulgaris
Phvul.001G212500 10.0kb downstream 10.0kb downstream 18944 true Chr01: 46867302-46886245 Phaseolus vulgaris
Phvul.001G212500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 46867302-46877301 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300035 5265 Fabidae View MSA
124062676 5270 Rosid View MSA
123736808 5271 Pentapetalae View MSA
122787445 5272 Eudicot View MSA
122041770 5273 Angiosperm View MSA
121347464 5274 Embryophyte View MSA
123426480 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.638377 0.0 2.05114   Low
cufflinks 2.30643 0.0 6.44858    
cufflinks 2.60233 0.0 7.18385    
cufflinks 0.69526 0.0 2.23396   Low
cufflinks 1.97892 0.0 5.64357    
cufflinks 3.10568 0.0 8.44925    
cufflinks 2.66608 0.0 7.34635    
cufflinks 3.03925 0.0 8.26173    
cufflinks 2.31827 0.0 6.48009    
cufflinks 3.02884 0.0 8.27271    
cufflinks 1.4572 0.0 4.28414    

0 Strain