Gene : Phvul.001G215900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31375:SF43 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  2142
Name:  ? Phvul.001G215900 Secondary Identifier:  ? PAC:37167945
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1081 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G215900 0.5kb upstream 0.5kb upstream 3182 true Chr01: 47223974-47227155 Phaseolus vulgaris
Phvul.001G215900 0.5kb upstream 0.5kb upstream 500 false Chr01: 47226656-47227155 Phaseolus vulgaris
Phvul.001G215900 0.5kb downstream 0.5kb downstream 3182 true Chr01: 47223474-47226655 Phaseolus vulgaris
Phvul.001G215900 0.5kb downstream 0.5kb downstream 500 false Chr01: 47223474-47223973 Phaseolus vulgaris
Phvul.001G215900 1.0kb upstream 1.0kb upstream 3682 true Chr01: 47223974-47227655 Phaseolus vulgaris
Phvul.001G215900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 47226656-47227655 Phaseolus vulgaris
Phvul.001G215900 1.0kb downstream 1.0kb downstream 3682 true Chr01: 47222974-47226655 Phaseolus vulgaris
Phvul.001G215900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 47222974-47223973 Phaseolus vulgaris
Phvul.001G215900 2.0kb upstream 2.0kb upstream 4682 true Chr01: 47223974-47228655 Phaseolus vulgaris
Phvul.001G215900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 47226656-47228655 Phaseolus vulgaris
Phvul.001G215900 2.0kb downstream 2.0kb downstream 4682 true Chr01: 47221974-47226655 Phaseolus vulgaris
Phvul.001G215900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 47221974-47223973 Phaseolus vulgaris
Phvul.001G215900 5.0kb upstream 5.0kb upstream 7682 true Chr01: 47223974-47231655 Phaseolus vulgaris
Phvul.001G215900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 47226656-47231655 Phaseolus vulgaris
Phvul.001G215900 5.0kb downstream 5.0kb downstream 7682 true Chr01: 47218974-47226655 Phaseolus vulgaris
Phvul.001G215900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 47218974-47223973 Phaseolus vulgaris
Phvul.001G215900 10.0kb upstream 10.0kb upstream 12682 true Chr01: 47223974-47236655 Phaseolus vulgaris
Phvul.001G215900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 47226656-47236655 Phaseolus vulgaris
Phvul.001G215900 10.0kb downstream 10.0kb downstream 12682 true Chr01: 47213974-47226655 Phaseolus vulgaris
Phvul.001G215900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 47213974-47223973 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312422 5265 Fabidae View MSA
124066514 5270 Rosid View MSA
123746353 5271 Pentapetalae View MSA
122791695 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0433585 0.0 0.209538 Low Low
cufflinks 0.0394577 0.0 0.194339 Low Low
cufflinks 0.222146 0.0 0.884297 Low  
cufflinks 0.119299 0.0 0.500016 Low  
cufflinks 1.51727 0.0 9.09647    
cufflinks 0.293209 0.0 1.43998 Low  
cufflinks 2.66203 0.0 11.6741    
cufflinks 4.76298 0.0 20.0993   High
cufflinks 1.69 0.0 8.14475    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.40729 0.0 7.92725    

0 Strain