Gene : Phvul.001G200000 P. vulgaris v2.1
Defline:  (1 of 2) K03252 - translation initiation factor 3 subunit C (EIF3C) Genomic Order:  1982
Name:  ? Phvul.001G200000 Secondary Identifier:  ? PAC:37170152
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G200000 0.5kb upstream 0.5kb upstream 4600 true Chr01: 45876656-45881255 Phaseolus vulgaris
Phvul.001G200000 0.5kb upstream 0.5kb upstream 500 false Chr01: 45876656-45877155 Phaseolus vulgaris
Phvul.001G200000 0.5kb downstream 0.5kb downstream 4600 true Chr01: 45877156-45881755 Phaseolus vulgaris
Phvul.001G200000 0.5kb downstream 0.5kb downstream 500 false Chr01: 45881256-45881755 Phaseolus vulgaris
Phvul.001G200000 1.0kb upstream 1.0kb upstream 5100 true Chr01: 45876156-45881255 Phaseolus vulgaris
Phvul.001G200000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 45876156-45877155 Phaseolus vulgaris
Phvul.001G200000 1.0kb downstream 1.0kb downstream 5100 true Chr01: 45877156-45882255 Phaseolus vulgaris
Phvul.001G200000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 45881256-45882255 Phaseolus vulgaris
Phvul.001G200000 2.0kb upstream 2.0kb upstream 6100 true Chr01: 45875156-45881255 Phaseolus vulgaris
Phvul.001G200000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 45875156-45877155 Phaseolus vulgaris
Phvul.001G200000 2.0kb downstream 2.0kb downstream 6100 true Chr01: 45877156-45883255 Phaseolus vulgaris
Phvul.001G200000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 45881256-45883255 Phaseolus vulgaris
Phvul.001G200000 5.0kb upstream 5.0kb upstream 9100 true Chr01: 45872156-45881255 Phaseolus vulgaris
Phvul.001G200000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 45872156-45877155 Phaseolus vulgaris
Phvul.001G200000 5.0kb downstream 5.0kb downstream 9100 true Chr01: 45877156-45886255 Phaseolus vulgaris
Phvul.001G200000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 45881256-45886255 Phaseolus vulgaris
Phvul.001G200000 10.0kb upstream 10.0kb upstream 14100 true Chr01: 45867156-45881255 Phaseolus vulgaris
Phvul.001G200000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 45867156-45877155 Phaseolus vulgaris
Phvul.001G200000 10.0kb downstream 10.0kb downstream 14100 true Chr01: 45877156-45891255 Phaseolus vulgaris
Phvul.001G200000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 45881256-45891255 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305110 5265 Fabidae View MSA
124064059 5270 Rosid View MSA
123748906 5271 Pentapetalae View MSA
122796222 5272 Eudicot View MSA
122042650 5273 Angiosperm View MSA
121345410 5274 Embryophyte View MSA
123424846 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.8891 0.0 49.2492   Low
cufflinks 52.7651 0.0 149.969 High  
cufflinks 38.3608 0.0 105.389    
cufflinks 22.5573 0.0 59.0669   Low
cufflinks 47.2514 0.0 131.658 High  
cufflinks 44.5611 0.0 124.35 High  
cufflinks 46.542 0.0 130.715 High  
cufflinks 49.8461 0.0 141.215 High  
cufflinks 55.9909 0.0 160.516 High  
cufflinks 48.4831 0.0 136.167 High  
cufflinks 43.5622 0.0 120.806 High  

0 Strain