Gene : Phvul.001G203800 P. vulgaris v2.1
Defline:  (1 of 2) PTHR32370:SF30 - BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 Genomic Order:  2020
Name:  ? Phvul.001G203800 Secondary Identifier:  ? PAC:37168440
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G203800 0.5kb upstream 0.5kb upstream 4586 true Chr01: 46213893-46218478 Phaseolus vulgaris
Phvul.001G203800 0.5kb upstream 0.5kb upstream 500 false Chr01: 46217979-46218478 Phaseolus vulgaris
Phvul.001G203800 0.5kb downstream 0.5kb downstream 4586 true Chr01: 46213393-46217978 Phaseolus vulgaris
Phvul.001G203800 0.5kb downstream 0.5kb downstream 500 false Chr01: 46213393-46213892 Phaseolus vulgaris
Phvul.001G203800 1.0kb upstream 1.0kb upstream 5086 true Chr01: 46213893-46218978 Phaseolus vulgaris
Phvul.001G203800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 46217979-46218978 Phaseolus vulgaris
Phvul.001G203800 1.0kb downstream 1.0kb downstream 5086 true Chr01: 46212893-46217978 Phaseolus vulgaris
Phvul.001G203800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 46212893-46213892 Phaseolus vulgaris
Phvul.001G203800 2.0kb upstream 2.0kb upstream 6086 true Chr01: 46213893-46219978 Phaseolus vulgaris
Phvul.001G203800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 46217979-46219978 Phaseolus vulgaris
Phvul.001G203800 2.0kb downstream 2.0kb downstream 6086 true Chr01: 46211893-46217978 Phaseolus vulgaris
Phvul.001G203800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 46211893-46213892 Phaseolus vulgaris
Phvul.001G203800 5.0kb upstream 5.0kb upstream 9086 true Chr01: 46213893-46222978 Phaseolus vulgaris
Phvul.001G203800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 46217979-46222978 Phaseolus vulgaris
Phvul.001G203800 5.0kb downstream 5.0kb downstream 9086 true Chr01: 46208893-46217978 Phaseolus vulgaris
Phvul.001G203800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 46208893-46213892 Phaseolus vulgaris
Phvul.001G203800 10.0kb upstream 10.0kb upstream 14086 true Chr01: 46213893-46227978 Phaseolus vulgaris
Phvul.001G203800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 46217979-46227978 Phaseolus vulgaris
Phvul.001G203800 10.0kb downstream 10.0kb downstream 14086 true Chr01: 46203893-46217978 Phaseolus vulgaris
Phvul.001G203800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 46203893-46213892 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122255148 5265 Fabidae View MSA
124062194 5270 Rosid View MSA
123742261 5271 Pentapetalae View MSA
122789969 5272 Eudicot View MSA
122042362 5273 Angiosperm View MSA
121350656 5274 Embryophyte View MSA
123381839 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.751924 0.0 3.09291   Low
cufflinks 1.57287 0.0 5.30508    
cufflinks 10.8432 0.0 34.3311   High
cufflinks 1.67271 0.0 6.71219    
cufflinks 8.01494 0.0 26.5205    
cufflinks 7.05966 0.0 23.6183    
cufflinks 6.53753 0.0 22.1382    
cufflinks 2.57648 0.0 10.7776    
cufflinks 6.91306 0.0 23.8515    
cufflinks 0.829539 0.0 3.97874   Low
cufflinks 10.2301 0.0 32.4595   High

0 Strain