Gene : Phvul.001G202800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR15657:SF1 - THYROID TRANSCRIPTION FACTOR 1-ASSOCIATED PROTEIN 26 Genomic Order:  2010
Name:  ? Phvul.001G202800 Secondary Identifier:  ? PAC:37170286
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G202800 0.5kb upstream 0.5kb upstream 3975 true Chr01: 46151116-46155090 Phaseolus vulgaris
Phvul.001G202800 0.5kb upstream 0.5kb upstream 500 false Chr01: 46154591-46155090 Phaseolus vulgaris
Phvul.001G202800 0.5kb downstream 0.5kb downstream 3975 true Chr01: 46150616-46154590 Phaseolus vulgaris
Phvul.001G202800 0.5kb downstream 0.5kb downstream 500 false Chr01: 46150616-46151115 Phaseolus vulgaris
Phvul.001G202800 1.0kb upstream 1.0kb upstream 4475 true Chr01: 46151116-46155590 Phaseolus vulgaris
Phvul.001G202800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 46154591-46155590 Phaseolus vulgaris
Phvul.001G202800 1.0kb downstream 1.0kb downstream 4475 true Chr01: 46150116-46154590 Phaseolus vulgaris
Phvul.001G202800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 46150116-46151115 Phaseolus vulgaris
Phvul.001G202800 2.0kb upstream 2.0kb upstream 5475 true Chr01: 46151116-46156590 Phaseolus vulgaris
Phvul.001G202800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 46154591-46156590 Phaseolus vulgaris
Phvul.001G202800 2.0kb downstream 2.0kb downstream 5475 true Chr01: 46149116-46154590 Phaseolus vulgaris
Phvul.001G202800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 46149116-46151115 Phaseolus vulgaris
Phvul.001G202800 5.0kb upstream 5.0kb upstream 8475 true Chr01: 46151116-46159590 Phaseolus vulgaris
Phvul.001G202800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 46154591-46159590 Phaseolus vulgaris
Phvul.001G202800 5.0kb downstream 5.0kb downstream 8475 true Chr01: 46146116-46154590 Phaseolus vulgaris
Phvul.001G202800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 46146116-46151115 Phaseolus vulgaris
Phvul.001G202800 10.0kb upstream 10.0kb upstream 13475 true Chr01: 46151116-46164590 Phaseolus vulgaris
Phvul.001G202800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 46154591-46164590 Phaseolus vulgaris
Phvul.001G202800 10.0kb downstream 10.0kb downstream 13475 true Chr01: 46141116-46154590 Phaseolus vulgaris
Phvul.001G202800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 46141116-46151115 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310128 5265 Fabidae View MSA
124065929 5270 Rosid View MSA
123736421 5271 Pentapetalae View MSA
122791858 5272 Eudicot View MSA
122042448 5273 Angiosperm View MSA
121343985 5274 Embryophyte View MSA
123426667 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.5999 0.0 34.438   High
cufflinks 12.405 0.0 33.9187   High
cufflinks 10.4637 0.0 28.9884    
cufflinks 8.15674 0.0 23.393    
cufflinks 5.46791 0.0 16.409   Low
cufflinks 8.57204 0.0 24.1723    
cufflinks 8.13881 0.0 23.0037    
cufflinks 11.4208 0.0 31.1931    
cufflinks 7.32098 0.0 20.9472    
cufflinks 5.01828 0.0 15.098   Low
cufflinks 7.76501 0.0 22.2589    

0 Strain