Gene : Phvul.001G205100 P. vulgaris v2.1
Defline:  (1 of 46) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  2034
Name:  ? Phvul.001G205100 Secondary Identifier:  ? PAC:37170714
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G205100 0.5kb upstream 0.5kb upstream 1892 true Chr01: 46316751-46318642 Phaseolus vulgaris
Phvul.001G205100 0.5kb upstream 0.5kb upstream 500 false Chr01: 46318143-46318642 Phaseolus vulgaris
Phvul.001G205100 0.5kb downstream 0.5kb downstream 1892 true Chr01: 46316251-46318142 Phaseolus vulgaris
Phvul.001G205100 0.5kb downstream 0.5kb downstream 500 false Chr01: 46316251-46316750 Phaseolus vulgaris
Phvul.001G205100 1.0kb upstream 1.0kb upstream 2392 true Chr01: 46316751-46319142 Phaseolus vulgaris
Phvul.001G205100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 46318143-46319142 Phaseolus vulgaris
Phvul.001G205100 1.0kb downstream 1.0kb downstream 2392 true Chr01: 46315751-46318142 Phaseolus vulgaris
Phvul.001G205100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 46315751-46316750 Phaseolus vulgaris
Phvul.001G205100 2.0kb upstream 2.0kb upstream 3392 true Chr01: 46316751-46320142 Phaseolus vulgaris
Phvul.001G205100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 46318143-46320142 Phaseolus vulgaris
Phvul.001G205100 2.0kb downstream 2.0kb downstream 3392 true Chr01: 46314751-46318142 Phaseolus vulgaris
Phvul.001G205100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 46314751-46316750 Phaseolus vulgaris
Phvul.001G205100 5.0kb upstream 5.0kb upstream 6392 true Chr01: 46316751-46323142 Phaseolus vulgaris
Phvul.001G205100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 46318143-46323142 Phaseolus vulgaris
Phvul.001G205100 5.0kb downstream 5.0kb downstream 6392 true Chr01: 46311751-46318142 Phaseolus vulgaris
Phvul.001G205100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 46311751-46316750 Phaseolus vulgaris
Phvul.001G205100 10.0kb upstream 10.0kb upstream 11392 true Chr01: 46316751-46328142 Phaseolus vulgaris
Phvul.001G205100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 46318143-46328142 Phaseolus vulgaris
Phvul.001G205100 10.0kb downstream 10.0kb downstream 11392 true Chr01: 46306751-46318142 Phaseolus vulgaris
Phvul.001G205100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 46306751-46316750 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312397 5265 Fabidae View MSA
124074689 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.42038 0.0 4.69968    
cufflinks 2.5144 0.0 7.82735    
cufflinks 0.313643 0.0 1.20614 Low Low
cufflinks 2.1126 0.0 6.73309    
cufflinks 1.60069 0.0 5.23893    
cufflinks 0.653141 0.0 2.35572   Low
cufflinks 1.78062 0.0 5.72961    
cufflinks 2.39364 0.0 7.48875    
cufflinks 1.22328 0.0 4.13328    
cufflinks 2.56685 0.0 7.97705    
cufflinks 1.57441 0.0 5.15448    

0 Strain