Gene : Phvul.001G193900 P. vulgaris v2.1
Defline:  (1 of 15) PTHR10797//PTHR10797:SF10 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // SUBFAMILY NOT NAMED Genomic Order:  1918
Name:  ? Phvul.001G193900 Secondary Identifier:  ? PAC:37170906
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G193900 0.5kb upstream 0.5kb upstream 1770 true Chr01: 45282669-45284438 Phaseolus vulgaris
Phvul.001G193900 0.5kb upstream 0.5kb upstream 500 false Chr01: 45282669-45283168 Phaseolus vulgaris
Phvul.001G193900 0.5kb downstream 0.5kb downstream 1770 true Chr01: 45283169-45284938 Phaseolus vulgaris
Phvul.001G193900 0.5kb downstream 0.5kb downstream 500 false Chr01: 45284439-45284938 Phaseolus vulgaris
Phvul.001G193900 1.0kb upstream 1.0kb upstream 2270 true Chr01: 45282169-45284438 Phaseolus vulgaris
Phvul.001G193900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 45282169-45283168 Phaseolus vulgaris
Phvul.001G193900 1.0kb downstream 1.0kb downstream 2270 true Chr01: 45283169-45285438 Phaseolus vulgaris
Phvul.001G193900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 45284439-45285438 Phaseolus vulgaris
Phvul.001G193900 2.0kb upstream 2.0kb upstream 3270 true Chr01: 45281169-45284438 Phaseolus vulgaris
Phvul.001G193900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 45281169-45283168 Phaseolus vulgaris
Phvul.001G193900 2.0kb downstream 2.0kb downstream 3270 true Chr01: 45283169-45286438 Phaseolus vulgaris
Phvul.001G193900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 45284439-45286438 Phaseolus vulgaris
Phvul.001G193900 5.0kb upstream 5.0kb upstream 6270 true Chr01: 45278169-45284438 Phaseolus vulgaris
Phvul.001G193900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 45278169-45283168 Phaseolus vulgaris
Phvul.001G193900 5.0kb downstream 5.0kb downstream 6270 true Chr01: 45283169-45289438 Phaseolus vulgaris
Phvul.001G193900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 45284439-45289438 Phaseolus vulgaris
Phvul.001G193900 10.0kb upstream 10.0kb upstream 11270 true Chr01: 45273169-45284438 Phaseolus vulgaris
Phvul.001G193900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 45273169-45283168 Phaseolus vulgaris
Phvul.001G193900 10.0kb downstream 10.0kb downstream 11270 true Chr01: 45283169-45294438 Phaseolus vulgaris
Phvul.001G193900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 45284439-45294438 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121785019 5273 Angiosperm View MSA
122308675 5265 Fabidae View MSA
124037425 5270 Rosid View MSA
123757237 5271 Pentapetalae View MSA
122778306 5272 Eudicot View MSA
121056420 5274 Embryophyte View MSA
123096330 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.1661 0.0 55.5233    
cufflinks 23.6428 0.0 61.8415   High
cufflinks 12.964 0.0 35.4643   Low
cufflinks 28.7307 0.0 74.4554   High
cufflinks 18.6405 0.0 49.1735    
cufflinks 15.276 0.0 41.1787    
cufflinks 15.3122 0.0 41.1101    
cufflinks 16.0635 0.0 43.0996    
cufflinks 16.9168 0.0 45.1974    
cufflinks 13.5011 0.0 36.6527   Low
cufflinks 20.4012 0.0 53.6492    

0 Strain