Gene : Phvul.001G196200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12975 - TRANSPORT PROTEIN TRAPP Genomic Order:  1945
Name:  ? Phvul.001G196200 Secondary Identifier:  ? PAC:37167750
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G196200 0.5kb upstream 0.5kb upstream 16339 true Chr01: 45569735-45586073 Phaseolus vulgaris
Phvul.001G196200 0.5kb upstream 0.5kb upstream 500 false Chr01: 45569735-45570234 Phaseolus vulgaris
Phvul.001G196200 0.5kb downstream 0.5kb downstream 16339 true Chr01: 45570235-45586573 Phaseolus vulgaris
Phvul.001G196200 0.5kb downstream 0.5kb downstream 500 false Chr01: 45586074-45586573 Phaseolus vulgaris
Phvul.001G196200 1.0kb upstream 1.0kb upstream 16839 true Chr01: 45569235-45586073 Phaseolus vulgaris
Phvul.001G196200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 45569235-45570234 Phaseolus vulgaris
Phvul.001G196200 1.0kb downstream 1.0kb downstream 16839 true Chr01: 45570235-45587073 Phaseolus vulgaris
Phvul.001G196200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 45586074-45587073 Phaseolus vulgaris
Phvul.001G196200 2.0kb upstream 2.0kb upstream 17839 true Chr01: 45568235-45586073 Phaseolus vulgaris
Phvul.001G196200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 45568235-45570234 Phaseolus vulgaris
Phvul.001G196200 2.0kb downstream 2.0kb downstream 17839 true Chr01: 45570235-45588073 Phaseolus vulgaris
Phvul.001G196200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 45586074-45588073 Phaseolus vulgaris
Phvul.001G196200 5.0kb upstream 5.0kb upstream 20839 true Chr01: 45565235-45586073 Phaseolus vulgaris
Phvul.001G196200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 45565235-45570234 Phaseolus vulgaris
Phvul.001G196200 5.0kb downstream 5.0kb downstream 20839 true Chr01: 45570235-45591073 Phaseolus vulgaris
Phvul.001G196200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 45586074-45591073 Phaseolus vulgaris
Phvul.001G196200 10.0kb upstream 10.0kb upstream 25839 true Chr01: 45560235-45586073 Phaseolus vulgaris
Phvul.001G196200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 45560235-45570234 Phaseolus vulgaris
Phvul.001G196200 10.0kb downstream 10.0kb downstream 25839 true Chr01: 45570235-45596073 Phaseolus vulgaris
Phvul.001G196200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 45586074-45596073 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303480 5265 Fabidae View MSA
124060620 5270 Rosid View MSA
123739059 5271 Pentapetalae View MSA
122789929 5272 Eudicot View MSA
122044079 5273 Angiosperm View MSA
121345213 5274 Embryophyte View MSA
123428270 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.56436 0.0 9.68118   Low
cufflinks 8.80888 0.0 22.797    
cufflinks 13.7386 0.0 35.6623    
cufflinks 4.9223 0.0 13.1127   Low
cufflinks 10.7955 0.0 27.9054    
cufflinks 13.1571 0.0 34.0991    
cufflinks 12.7034 0.0 32.8894    
cufflinks 12.8823 0.0 33.3989    
cufflinks 12.5379 0.0 32.4422    
cufflinks 17.211 0.0 44.9936   High
cufflinks 8.19397 0.0 21.2603    

0 Strain